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SCNpilot_expt_1000_bf_scaffold_1310_curated

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1310_curated_1
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..951
DNA (951bp) protein (317aa)
Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Rhizobium sp. AP16 RepID=J2DAK3_9RHIZ
tacA; sigma-54-dependent transcriptional regulator (activator) protein
Fis family transcriptional regulator {ECO:0000313|EMBL:KEA05761.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
SCNpilot_expt_1000_bf_scaffold_1310_curated_2
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1188..3050
DNA (1863bp) protein (621aa)
Peptidase M15 family protein n=1 Tax=Rhizobium etli bv. mimosae str. Mim1 RepID=S5SMR1_RHIET
peptidase M15 family protein
Peptidase M15 family protein {ECO:0000313|EMBL:AGS23347.1}; TaxID=1328306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. Mim1.;"
SCNpilot_expt_1000_bf_scaffold_1310_curated_3
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3133..3231)
DNA (99bp) protein (33aa)
UPF0335 protein Oant_1161 n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=Y1161_OCHA4
hypothetical protein
UPF0335 protein Oant_1161 {ECO:0000255|HAMAP-Rule:MF_00797}; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
SCNpilot_expt_1000_bf_scaffold_1310_curated_4
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3506..3811)
DNA (306bp) protein (102aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF080 RepID=J3CTJ6_9RHIZ
Alkaline phosphatase {ECO:0000313|EMBL:KGD92054.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1310_curated_5
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3808..4668)
DNA (861bp) protein (287aa)
N-formylglutamate amidohydrolase n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI000367C1F6
amidohydrolase
N-formylglutamate amidohydrolase protein {ECO:0000313|EMBL:AJC81069.1}; TaxID=1432049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. phaseoli str. IE4803.;"
SCNpilot_expt_1000_bf_scaffold_1310_curated_6
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4817..5290
DNA (474bp) protein (158aa)
membrane protein n=1 Tax=Rhizobium gallicum RepID=UPI000376606B
Membrane protein {ECO:0000313|EMBL:AHF85607.1}; TaxID=754523 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM1689.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1310_curated_7
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5290..6729
DNA (1440bp) protein (480aa)
Pyruvate kinase {ECO:0000256|RuleBase:RU000504}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504};; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
pykA; pyruvate kinase (EC:2.7.1.40); K00873 pyruvate kinase [EC:2.7.1.40]
Pyruvate kinase n=1 Tax=Rhizobium sp. CF142 RepID=J1SN91_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1310_curated_8
unknown

Not on your lists

6870..7268
DNA (399bp) protein (133aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1310_curated_9
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7326..7940
DNA (615bp) protein (205aa)
Putative uncharacterized protein n=1 Tax=Rhizobium etli CNPAF512 RepID=F2AHM9_RHIET
Uncharacterized protein {ECO:0000313|EMBL:EGE55990.1}; TaxID=993047 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli CNPAF512.;"
SCNpilot_expt_1000_bf_scaffold_1310_curated_10
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7830..8495)
DNA (666bp) protein (222aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI0003692730
TPR repeat-containing protein
Conserved hypothetical exported TPR repeat protein {ECO:0000313|EMBL:CAK09536.1}; TaxID=216596 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae (strain 3841).;"
SCNpilot_expt_1000_bf_scaffold_1310_curated_11
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8536..8661)
DNA (126bp) protein (42aa)
50S ribosomal protein L36 n=6 Tax=Rhizobium RepID=RL36_RHILW
50S ribosomal protein L36; K02919 large subunit ribosomal protein L36
50S ribosomal protein L36 {ECO:0000256|HAMAP-Rule:MF_00251, ECO:0000256|RuleBase:RU000571}; TaxID=707241 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain SM11).;"
SCNpilot_expt_1000_bf_scaffold_1310_curated_12
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8834..9880)
DNA (1047bp) protein (349aa)
phosphoribosylaminoimidazole carboxylase ATPase subunit; K01589 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
N5-carboxyaminoimidazole ribonucleotide synthase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200}; Short=N5-CAIR synthase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200};; EC=6.3.4.18 {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200};; 5-(carboxyamino)imidazole ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agr
phosphoribosylaminoimidazole carboxylase n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00035E57FB
SCNpilot_expt_1000_bf_scaffold_1310_curated_13
Sinorhizobium americanum, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9880..10380)
DNA (501bp) protein (167aa)
purE; N5-carboxyaminoimidazole ribonucleotide mutase PurE (EC:5.4.99.18)
N5-carboxyaminoimidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338}; Short=N5-CAIR mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; EC=5.4.99.18 {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; 5-(carboxyamino)imidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929}; TaxID=1408224 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" sourc
N5-carboxyaminoimidazole ribonucleotide mutase n=1 Tax=Sinorhizobium medicae RepID=UPI0003762EC5
SCNpilot_expt_1000_bf_scaffold_1310_curated_14
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10405..10608)
DNA (204bp) protein (68aa)
hypothetical protein n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI000377EDCE
Coiled-coil domain protein-containing protein {ECO:0000313|EMBL:EJL48679.1}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1310_curated_15
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10829..11002
DNA (174bp) protein (58aa)
Uncharacterized protein n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2Q4W9_9RHIZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKF58759.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
SCNpilot_expt_1000_bf_scaffold_1310_curated_16
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11192..11452)
DNA (261bp) protein (87aa)
Transcriptional regulator ArsR family n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9JS17_AGRVS
transcriptional regulator ArsR family
Transcriptional regulator ArsR family {ECO:0000313|EMBL:ACM37645.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCNpilot_expt_1000_bf_scaffold_1310_curated_17
Stenotrophomonas sp. SKA14, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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11555..11905
DNA (351bp) protein (117aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8L8M7_9GAMM
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:EED38255.1}; TaxID=391601 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. SKA14.;"
glyoxalase/bleomycin resistance protein/dioxygenase
SCNpilot_expt_1000_bf_scaffold_1310_curated_18
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12487..12672
DNA (186bp) protein (62aa)
thiEch; thiamine-phosphate pyrophosphorylase (EC:2.5.1.3); K00788 thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
Thiamine-phosphate pyrophosphorylase protein n=1 Tax=Rhizobium etli (strain CIAT 652) RepID=B3PZ50_RHIE6
Thiamine monophosphate synthase protein {ECO:0000313|EMBL:AIC28890.1}; TaxID=1432050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. IE4771.;"
SCNpilot_expt_1000_bf_scaffold_1310_curated_19
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12681..13766
DNA (1086bp) protein (362aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI0003616212
hypothetical protein; K07126
Hypothetical conserved protein {ECO:0000313|EMBL:ACE92713.1}; TaxID=491916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CIAT 652).;"
SCNpilot_expt_1000_bf_scaffold_1310_curated_20
Mesorhizobium sp. LNHC232B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13771..14079
DNA (309bp) protein (103aa)
Uncharacterized protein n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7Y3R5_MESOW
hypothetical protein; K06940
Fe-S oxidoreductase {ECO:0000313|EMBL:ESY66442.1}; TaxID=1287243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;"
SCNpilot_expt_1000_bf_scaffold_1310_curated_21
Rhizobium sp. CCGE 510, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14207..15007
DNA (801bp) protein (267aa)
suhBch; myo-inositol-1(or 4)-monophosphatase (EC:3.1.3.25); K01092 myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
Inositol-phosphate phosphatase n=1 Tax=Rhizobium sp. CCGE 510 RepID=J4TA05_9RHIZ
Inositol-phosphate phosphatase {ECO:0000313|EMBL:EJT04177.1}; TaxID=1132836 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CCGE 510.;"
SCNpilot_expt_1000_bf_scaffold_1310_curated_22
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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15131..16192
DNA (1062bp) protein (354aa)
MotA/TolQ/ExbB proton channel family n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LQF2_RHITR
MotA/TolQ/ExbB proton channel family
MotA/TolQ/ExbB proton channel family {ECO:0000313|EMBL:AGB72349.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_1310_curated_23
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16196..17227
DNA (1032bp) protein (344aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00036EC251
OmpA/MotB domain protein {ECO:0000313|EMBL:EHS49545.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
Putative flagellar motor protein MotB
SCNpilot_expt_1000_bf_scaffold_1310_curated_24
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17260..19041)
DNA (1782bp) protein (594aa)
ABC transporter n=1 Tax=Rhizobium phaseoli RepID=UPI0003158919
Multidrug ABC transporter ATP-binding protein {ECO:0000313|EMBL:KEC74497.1}; TaxID=1408223 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. phaseoli CCGM1.;"
ATP-binding component of ABC transporter; K06147 ATP-binding cassette, subfamily B, bacterial
SCNpilot_expt_1000_bf_scaffold_1310_curated_25
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


19233..19454
DNA (222bp) protein (74aa)
50S ribosomal protein L31 n=8 Tax=Rhizobium RepID=RL31_RHIE6
rpmE; 50S ribosomal protein L31; K02909 large subunit ribosomal protein L31
50S ribosomal protein L31 {ECO:0000256|HAMAP-Rule:MF_00501, ECO:0000256|SAAS:SAAS00004482}; TaxID=754764 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM597.;"
SCNpilot_expt_1000_bf_scaffold_1310_curated_26
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19622..20137)
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0VY21_RHILT
hypothetical protein; K13592 regulator of CtrA degradation
Uncharacterized protein {ECO:0000313|EMBL:EJC77748.1}; TaxID=754522 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2012.;"
SCNpilot_expt_1000_bf_scaffold_1310_curated_27
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20516..20707)
DNA (192bp) protein (64aa)
Uncharacterized protein n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3XD06_RHIFR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFL53762.1}; TaxID=1185652 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium fredii USDA 257.;"
SCNpilot_expt_1000_bf_scaffold_1310_curated_28
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20704..21987)
DNA (1284bp) protein (428aa)
Arabinose efflux permease family protein n=1 Tax=Rhizobium leguminosarum bv. viciae WSM1455 RepID=J0V450_RHILV
Arabinose efflux permease family protein {ECO:0000313|EMBL:EJC68001.1}; Flags: Precursor;; TaxID=755176 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae WSM1455.;"
transmembrane transporter protein
SCNpilot_expt_1000_bf_scaffold_1310_curated_29
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22139..22300
DNA (162bp) protein (54aa)
Uncharacterized protein n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3XD03_RHIFR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFL53759.1}; TaxID=1185652 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium fredii USDA 257.;"
SCNpilot_expt_1000_bf_scaffold_1310_curated_30
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22341..23261)
DNA (921bp) protein (307aa)
Phenazine biosynthesis protein PhzF family n=1 Tax=Rhizobium sp. CF080 RepID=J2QCK0_9RHIZ
PhzF family phenazine biosynthesis protein {ECO:0000313|EMBL:KGD92080.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
phenazine biosynthesis protein PhzF family protein; K06998
Displaying items 1-30 of 35 in total

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