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SCNpilot_expt_1000_bf_scaffold_1068_curated

Search features with annotation key words

Displaying items 31-60 of 81 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1068_curated_31
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30533..31006
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J0J6_POLGS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADZ69664.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCNpilot_expt_1000_bf_scaffold_1068_curated_32
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31024..31809
DNA (786bp) protein (262aa)
glyoxalase n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI000376C60C
glyoxalase/bleomycin resistance protein/dioxygenase; K06996
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:ACI54112.1}; TaxID=395492 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM2304).;"
SCNpilot_expt_1000_bf_scaffold_1068_curated_33
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32030..33628)
DNA (1599bp) protein (533aa)
hypothetical protein n=1 Tax=Rhizobium meliloti RepID=UPI000374C67A
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAC45536.1}; TaxID=266834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium; meliloti).;"
SCNpilot_expt_1000_bf_scaffold_1068_curated_34
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33727..34122
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2297 RepID=J0W2F4_RHILT
Uncharacterized protein {ECO:0000313|EMBL:AJD40469.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1068_curated_35
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34327..35097)
DNA (771bp) protein (257aa)
Trans-aconitate 2-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00560, ECO:0000256|SAAS:SAAS00012147}; EC=2.1.1.144 {ECO:0000256|HAMAP-Rule:MF_00560, ECO:0000256|SAAS:SAAS00012147};; TaxID=754764 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM597.;"
tam; trans-aconitate 2-methyltransferase (EC:2.1.1.144); K00598 trans-aconitate 2-methyltransferase [EC:2.1.1.144]
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036B0042
SCNpilot_expt_1000_bf_scaffold_1068_curated_36
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35111..36151)
DNA (1041bp) protein (347aa)
alcohol dehydrogenase zinc-binding domain-containing protein; K00001 alcohol dehydrogenase [EC:1.1.1.1]
Zn-dependent alcohol dehydrogenase n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2297 RepID=J0VYF7_RHILT
Putative alcohol dehydrogenase {ECO:0000313|EMBL:GAJ91404.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
SCNpilot_expt_1000_bf_scaffold_1068_curated_37
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36393..37697
DNA (1305bp) protein (435aa)
ilvE1; aminotransferase (EC:2.6.1.42); K00826 branched-chain amino acid aminotransferase [EC:2.6.1.42]
Aminotransferase n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2Q2B5_9RHIZ
Aminotransferase {ECO:0000313|EMBL:EKF59260.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
SCNpilot_expt_1000_bf_scaffold_1068_curated_38
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37839..38393
DNA (555bp) protein (185aa)
Superoxide dismutase {ECO:0000256|RuleBase:RU000414}; EC=1.15.1.1 {ECO:0000256|RuleBase:RU000414};; TaxID=1050720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens F2.;"
sodBI; superoxide dismutase; K04564 superoxide dismutase, Fe-Mn family [EC:1.15.1.1]
Superoxide dismutase n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7U6L4_RHIRD
SCNpilot_expt_1000_bf_scaffold_1068_curated_39
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38662..39102
DNA (441bp) protein (147aa)
cytochrome C556 n=1 Tax=Rhizobium mongolense RepID=UPI0003B457CA
Cytochrome c-556 protein {ECO:0000313|EMBL:AJD40494.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
cycF; cytochrome-c-556 signal peptide protein
SCNpilot_expt_1000_bf_scaffold_1068_curated_40
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

39194..40108
DNA (915bp) protein (305aa)
Diheme cytochrome c signal peptide protein n=1 Tax=Rhizobium etli CNPAF512 RepID=F2AJK9_RHIET
Diheme cytochrome c signal peptide protein {ECO:0000313|EMBL:EGE55356.1}; TaxID=993047 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli CNPAF512.;"
cycG; diheme cytochrome-c-type signal peptide protein
SCNpilot_expt_1000_bf_scaffold_1068_curated_41
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(40105..40680)
DNA (576bp) protein (192aa)
ThiJ/PfpI family protein n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HKJ8_9RHIZ
ThiJ/PfpI family protein {ECO:0000313|EMBL:EPE99327.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
ThiJ/PfpI family protein
SCNpilot_expt_1000_bf_scaffold_1068_curated_42
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(40706..41194)
DNA (489bp) protein (163aa)
Acetyltransferase n=1 Tax=Rhizobium sp. CF080 RepID=J2TEJ1_9RHIZ
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:EUB95345.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
acetyltransferase
SCNpilot_expt_1000_bf_scaffold_1068_curated_43
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(41393..41815)
DNA (423bp) protein (141aa)
Putative transcriptional regulator n=1 Tax=Rhizobium sp. CF080 RepID=J3CRF5_9RHIZ
Transcriptional regulator, MerR family {ECO:0000313|EMBL:EUB95341.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
transcriptional regulator, MerR family
SCNpilot_expt_1000_bf_scaffold_1068_curated_44
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(41884..42363)
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=Agrobacterium sp. (strain H13-3) RepID=F0LEP2_AGRSH
Uncharacterized protein {ECO:0000313|EMBL:KDP76042.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1068_curated_45
unknown

Not on your lists

comp(42485..42808)
DNA (324bp) protein (108aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1068_curated_46
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(43075..45183)
DNA (2109bp) protein (703aa)
ptrB; protease II protein (EC:3.4.21.83); K01354 oligopeptidase B [EC:3.4.21.83]
peptidase S9 n=1 Tax=Rhizobium leguminosarum RepID=UPI000367EBA1
Protease II protein {ECO:0000313|EMBL:EGE59779.1}; TaxID=993047 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli CNPAF512.;"
SCNpilot_expt_1000_bf_scaffold_1068_curated_47
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

45464..45895
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LIC4_RHITR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGB70466.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_1068_curated_48
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

45995..46768
DNA (774bp) protein (258aa)
polysaccharide deacetylase n=1 Tax=Agrobacterium sp. 224MFTsu3.1 RepID=UPI00036C7B23
Putative hydrolase {ECO:0000313|EMBL:GAK71691.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
polysaccharide deacetylase
SCNpilot_expt_1000_bf_scaffold_1068_curated_49
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(46773..48020)
DNA (1248bp) protein (416aa)
Glycine/D-amino acid oxidase, deaminating n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2297 RepID=J0KM84_RHILT
Glycine/D-amino acid oxidase, deaminating {ECO:0000313|EMBL:EJC78474.1}; TaxID=754762 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2297.;"
FAD dependent oxidoreductase
SCNpilot_expt_1000_bf_scaffold_1068_curated_50
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(48056..49174)
DNA (1119bp) protein (373aa)
Putative transmembrane permease protein n=1 Tax=Rhizobium etli CNPAF512 RepID=F2AAY1_RHIET
Transmembrane permease {ECO:0000313|EMBL:KEC76068.1}; TaxID=1408223 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. phaseoli CCGM1.;"
transporter permease protein
SCNpilot_expt_1000_bf_scaffold_1068_curated_51
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(49267..50223)
DNA (957bp) protein (319aa)
glyoxalase n=1 Tax=Rhizobium phaseoli RepID=UPI000366D70C
Ring-cleaving dioxygenase protein {ECO:0000313|EMBL:AJD40514.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
glyoxylase; K07104
SCNpilot_expt_1000_bf_scaffold_1068_curated_52
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

50484..50894
DNA (411bp) protein (137aa)
universal stress protein n=1 Tax=Rhizobium mongolense RepID=UPI0003B689C0
Universal stress UspF protein {ECO:0000313|EMBL:AJD40515.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
Universal stress protein F, putative
SCNpilot_expt_1000_bf_scaffold_1068_curated_53
Rhizobium nepotum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

50906..51235
DNA (330bp) protein (110aa)
DnaK suppressor protein n=1 Tax=Rhizobium sp. CF080 RepID=J3C0I2_9RHIZ
Dimethylmenaquinone methyltransferase {ECO:0000313|EMBL:KJF69557.1}; TaxID=1368418 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium nepotum 39/7.;"
dskA; DnaK suppressor protein
SCNpilot_expt_1000_bf_scaffold_1068_curated_54
Candidatus Amoebophilus asiaticus, Candidatus Amoebophilus, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(51236..52612)
DNA (1377bp) protein (459aa)
Uncharacterized protein n=1 Tax=Amoebophilus asiaticus (strain 5a2) RepID=B3ESM2_AMOA5
Sel1 domain-containing protein; K07126
Uncharacterized protein {ECO:0000313|EMBL:ACE06224.1}; TaxID=452471 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Amoebophilaceae; Candidatus Amoebophilus.;" source="Amoebophilus asiaticus (strain 5a2).;"
SCNpilot_expt_1000_bf_scaffold_1068_curated_55
Rhizobium sp. UR51a, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(52886..53293)
DNA (408bp) protein (136aa)
msrB; methionine sulfoxide reductase B (EC:1.8.4.11)
Peptide methionine sulfoxide reductase MsrB {ECO:0000256|HAMAP-Rule:MF_01400}; EC=1.8.4.12 {ECO:0000256|HAMAP-Rule:MF_01400};; Peptide-methionine (R)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01400}; TaxID=1604021 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. UR51a.;"
Peptide methionine sulfoxide reductase MsrB n=2 Tax=Rhizobium RepID=U4Q273_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1068_curated_56
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

53462..56176
DNA (2715bp) protein (905aa)
cation:proton antiporter n=1 Tax=Rhizobium mongolense RepID=UPI0003B569DC
Na+/H+ antiporter subunit A {ECO:0000313|EMBL:AJD40520.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
monovalent cation/H+ antiporter subunit A; K05565 multicomponent Na+:H+ antiporter subunit A
SCNpilot_expt_1000_bf_scaffold_1068_curated_57
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

56173..56553
DNA (381bp) protein (127aa)
Multisubunit Na+/H+ antiporter, MnhC subunit n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0C441_RHILT
Multisubunit Na+/H+ antiporter, MnhC subunit {ECO:0000313|EMBL:EJC73690.1}; TaxID=754522 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2012.;"
monovalent cation/H+ antiporter subunit C; K05567 multicomponent Na+:H+ antiporter subunit C
SCNpilot_expt_1000_bf_scaffold_1068_curated_58
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

56554..58095
DNA (1542bp) protein (514aa)
Na(+)/H(+) antiporter subunit D n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CVW8_9RHIZ
Cation:proton antiporter {ECO:0000313|EMBL:KDP76071.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
mnhD; monovalent cation/H+ antiporter subunit D; K05568 multicomponent Na+:H+ antiporter subunit D
SCNpilot_expt_1000_bf_scaffold_1068_curated_59
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

58092..58565
DNA (474bp) protein (158aa)
Multisubunit Na+/H+ antiporter, MnhE subunit n=1 Tax=Rhizobium sp. CF142 RepID=J2AUX5_9RHIZ
Putative monovalent cation/H+ antiporter {ECO:0000313|EMBL:AHK43760.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
putative monovalent cation/H+ antiporter subunit E; K05569 multicomponent Na+:H+ antiporter subunit E
SCNpilot_expt_1000_bf_scaffold_1068_curated_60
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

58562..58885
DNA (324bp) protein (108aa)
Multisubunit Na+/H+ antiporter, MnhF subunit n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0BTW4_RHILT
Putative monovalent cation/H+ antiporter {ECO:0000313|EMBL:AHK43761.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
mnhF; PhaF2 protein; K05570 multicomponent Na+:H+ antiporter subunit F
Displaying items 31-60 of 81 in total

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