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SCNpilot_expt_1000_bf_scaffold_1068_curated

Search features with annotation key words

Displaying items 1-30 of 81 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1068_curated_1
Cronobacter muytjensii, Cronobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

629..1147
DNA (519bp) protein (173aa)
Uncharacterized protein n=1 Tax=Brucella abortus 90-1280 RepID=S3R758_BRUAO
Uncharacterized protein {ECO:0000313|EMBL:CCJ76496.1}; TaxID=1208586 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Cronobacter.;" source="Cronobacter muytjensii 530.;"
SCNpilot_expt_1000_bf_scaffold_1068_curated_2
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1260..2000)
DNA (741bp) protein (247aa)
Phosphoadenosine phosphosulfate reductase n=1 Tax=Rhizobium sp. Pop5 RepID=K0VP04_9RHIZ
Phosphoadenosine phosphosulfate reductase {ECO:0000313|EMBL:EJZ20576.1}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
phosphoadenosine phosphosulfate reductase
SCNpilot_expt_1000_bf_scaffold_1068_curated_3
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2175..2369)
DNA (195bp) protein (65aa)
Chloride channel core n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3I314_9RHIZ
Chloride channel core {ECO:0000313|EMBL:EPE99566.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
chloride channel core protein
SCNpilot_expt_1000_bf_scaffold_1068_curated_4
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2376..3521)
DNA (1146bp) protein (382aa)
chloride channel protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00036DB886
Chloride channel core {ECO:0000313|EMBL:EPE99566.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
Chloride channel core
SCNpilot_expt_1000_bf_scaffold_1068_curated_5
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3601..5253)
DNA (1653bp) protein (551aa)
Oxygen-dependent choline dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00750, ECO:0000256|SAAS:SAAS00054588}; Short=CDH {ECO:0000256|HAMAP-Rule:MF_00750};; Short=CHD {ECO:0000256|HAMAP-Rule:MF_00750};; EC=1.1.99.1 {ECO:0000256|HAMAP-Rule:MF_00750, ECO:0000256|SAAS:SAAS00054587};; Betaine aldehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00750}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
betA; choline dehydrogenase; K00108 choline dehydrogenase [EC:1.1.99.1] rbh
choline dehydrogenase n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI000361FA07
SCNpilot_expt_1000_bf_scaffold_1068_curated_6
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5268..6731)
DNA (1464bp) protein (488aa)
betB; betaine aldehyde dehydrogenase; K00130 betaine-aldehyde dehydrogenase [EC:1.2.1.8]
NAD/NADP-dependent betaine aldehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00804}; Short=BADH {ECO:0000256|HAMAP-Rule:MF_00804};; EC=1.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00804};; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
NAD/NADP-dependent betaine aldehyde dehydrogenase n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=BETB_AGRRK rbh
SCNpilot_expt_1000_bf_scaffold_1068_curated_7
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6733..8262)
DNA (1530bp) protein (510aa)
Choline sulfatase {ECO:0000313|EMBL:CCE95139.1}; EC=3.1.6.6 {ECO:0000313|EMBL:CCE95139.1};; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
Choline sulfatase n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A249_RHIFH
betC; choline sulfatase
SCNpilot_expt_1000_bf_scaffold_1068_curated_8
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8318..8902)
DNA (585bp) protein (195aa)
HTH-type transcriptional regulator BetI n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM597 RepID=I9N725_RHILT
BetI family transcriptional regulator; K02167 TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
HTH-type transcriptional regulator BetI {ECO:0000256|HAMAP-Rule:MF_00768}; TaxID=754764 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM597.;"
SCNpilot_expt_1000_bf_scaffold_1068_curated_9
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9050..9607
DNA (558bp) protein (186aa)
HdeD protein n=1 Tax=Rhizobium sp. JGI 0001005-H05 RepID=UPI00037D5A28
Uncharacterized protein {ECO:0000313|EMBL:AJD40420.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
transmembrane protein
SCNpilot_expt_1000_bf_scaffold_1068_curated_10
unknown

Not on your lists

9752..9883
DNA (132bp) protein (44aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1068_curated_11
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9891..11579
DNA (1689bp) protein (563aa)
diguanylate cyclase n=1 Tax=Rhizobium leguminosarum RepID=UPI00036EA259
Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:EJC70070.1}; TaxID=755176 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae WSM1455.;"
GGDEF/EAL sensory box protein
SCNpilot_expt_1000_bf_scaffold_1068_curated_12
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11661..12680
DNA (1020bp) protein (340aa)
Quinone oxidoreductase n=1 Tax=Rhizobium sp. RepID=L0NCE8_RHISP
NAD(P)H-quinone oxidoreductase {ECO:0000313|EMBL:KGD85940.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
putative quinone oxidoreductase
SCNpilot_expt_1000_bf_scaffold_1068_curated_13
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12780..13439)
DNA (660bp) protein (220aa)
gst2; glutathione S-transferase; K00799 glutathione S-transferase [EC:2.5.1.18]
Glutathione S-transferase domain protein n=2 Tax=Rhizobium meliloti RepID=F6E2Y1_SINMK
Glutathione-S-transferase {ECO:0000313|EMBL:AHK43711.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
SCNpilot_expt_1000_bf_scaffold_1068_curated_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13555..14919)
DNA (1365bp) protein (455aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ES84_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR79159.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1068_curated_15
unknown

Not on your lists

comp(15393..15842)
DNA (450bp) protein (150aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1068_curated_16
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16126..17478
DNA (1353bp) protein (451aa)
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0VLR9_RHILT
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:EJC73763.1}; TaxID=754522 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2012.;"
PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase
SCNpilot_expt_1000_bf_scaffold_1068_curated_17
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17675..18685
DNA (1011bp) protein (337aa)
Putative exonuclease, DNA ligase-associated n=1 Tax=Rhizobium sp. CF080 RepID=J3BSY6_9RHIZ
Putative exonuclease, DNA ligase-associated {ECO:0000313|EMBL:EUB95393.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
mRNA processing exonuclease; K07577 putative mRNA 3-end processing factor
SCNpilot_expt_1000_bf_scaffold_1068_curated_18
Rhizobium nepotum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18690..20300
DNA (1611bp) protein (537aa)
ATP-dependent DNA ligase n=1 Tax=Agrobacterium sp. 224MFTsu3.1 RepID=UPI00035FC57F
ATP-dependent DNA ligase {ECO:0000313|EMBL:KJF65805.1}; TaxID=1368418 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium nepotum 39/7.;"
ATP-dependent DNA ligase
SCNpilot_expt_1000_bf_scaffold_1068_curated_19
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20307..22238)
DNA (1932bp) protein (644aa)
Uncharacterized protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9JTB4_AGRVS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM35827.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCNpilot_expt_1000_bf_scaffold_1068_curated_20
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22492..23499)
DNA (1008bp) protein (336aa)
L-asparaginase II n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0K8N8_RHILT
L-asparaginase II {ECO:0000313|EMBL:EJC73774.1}; TaxID=754522 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2012.;"
L-asparaginase II
SCNpilot_expt_1000_bf_scaffold_1068_curated_21
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23679..24296)
DNA (618bp) protein (206aa)
Transcriptional regulator n=1 Tax=Rhizobium sp. Pop5 RepID=K0VP11_9RHIZ
Transcriptional regulator {ECO:0000313|EMBL:EJZ20586.1}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1068_curated_22
unknown

Not on your lists

24412..24522
DNA (111bp) protein (37aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1068_curated_23
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24544..25842
DNA (1299bp) protein (433aa)
major facilitator transporter n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00036EC2D8
Multidrug efflux transporter {ECO:0000313|EMBL:EYR79176.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
transmembrane transporter protein
SCNpilot_expt_1000_bf_scaffold_1068_curated_24
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25839..26240
DNA (402bp) protein (134aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00037E4D9B
Uncharacterized protein {ECO:0000313|EMBL:AHF86771.1}; TaxID=754523 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM1689.;"
SCNpilot_expt_1000_bf_scaffold_1068_curated_25
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26237..27145)
DNA (909bp) protein (303aa)
LysR family transcriptional regulator n=1 Tax=Rhizobium leguminosarum RepID=UPI0003793063
Transcriptional regulator {ECO:0000313|EMBL:EJC70082.1}; Flags: Precursor;; TaxID=755176 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae WSM1455.;"
LysR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1068_curated_26
unknown

Not on your lists

27251..27478
DNA (228bp) protein (76aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1068_curated_27
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27552..28334
DNA (783bp) protein (261aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. RepID=L0NC71_RHISP
Uncharacterized protein {ECO:0000313|EMBL:CCF18494.1}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
L,D-transpeptidase domain-containing protein
SCNpilot_expt_1000_bf_scaffold_1068_curated_28
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28479..29210
DNA (732bp) protein (244aa)
hypothetical protein n=1 Tax=Rhizobium mongolense RepID=UPI0003B3ECD7
ErfK/YbiS/YcfS/YnhG family protein {ECO:0000313|EMBL:KGD85918.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1068_curated_29
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29264..29710)
DNA (447bp) protein (149aa)
Transcriptional regulator, MarR family protein n=1 Tax=Agrobacterium tumefaciens CCNWGS0286 RepID=G6Y0J1_RHIRD
MarR family transcriptional regulator
MarR family transcriptional regulator {ECO:0000313|EMBL:EPR08474.1}; TaxID=1336745 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter DSM 30147.;"
SCNpilot_expt_1000_bf_scaffold_1068_curated_30
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29780..30508
DNA (729bp) protein (243aa)
Uncharacterized protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2297 RepID=J0W423_RHILT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EJC79913.1}; TaxID=754762 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2297.;"
Displaying items 1-30 of 81 in total

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