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SCNpilot_expt_1000_bf_scaffold_1143_curated

Search features with annotation key words

Displaying items 31-59 of 59 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1143_curated_31
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30962..31684)
DNA (723bp) protein (241aa)
ABC-type polar amino acid transport system, ATPase component (EC:3.6.3.-)
Glutamine transport ATP-binding protein GlnQ n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D0E1_9RHIZ
Glutamine transport ATP-binding protein GlnQ {ECO:0000313|EMBL:EYR80312.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_1143_curated_32
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31677..32327)
DNA (651bp) protein (217aa)
amino acid ABC transporter n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI00036B5E14
Putative permease component of ABC transporter {ECO:0000313|EMBL:AHK46229.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
amino acid ABC transporter permease; K02029 polar amino acid transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1143_curated_33
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32341..33006)
DNA (666bp) protein (222aa)
Amine acid ABC transporter, permease protein His/Glu/Gln/Arg/opine family n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CBI2_9RHIZ
Amine acid ABC transporter, permease protein His/Glu/Gln/Arg/opine family {ECO:0000313|EMBL:EYR80310.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
amino acid ABC transporter permease; K02029 polar amino acid transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_1143_curated_34
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33078..33887)
DNA (810bp) protein (270aa)
Amino acid ABC transporter substrate binding protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ETA4_9RHIZ
Amino acid ABC transporter substrate binding protein {ECO:0000313|EMBL:EYR80309.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Periplasmic component of amino acid ABC-type transporter/signal transduction system
SCNpilot_expt_1000_bf_scaffold_1143_curated_35
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34064..34702)
DNA (639bp) protein (213aa)
aldH; NADP-dependent fatty aldehyde dehydrogenase (EC:1.2.1.4)
2,5-dioxovalerate dehydrogenase n=1 Tax=Rhizobium meliloti RepID=UPI0002FF2860
Aldehyde dehydrogenase (NADP+) {ECO:0000313|EMBL:AEH84181.1}; TaxID=707241 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain SM11).;"
SCNpilot_expt_1000_bf_scaffold_1143_curated_36
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34657..35406)
DNA (750bp) protein (250aa)
NADP-dependent fatty aldehyde dehydrogenase AldH {ECO:0000313|EMBL:EYR80308.1}; EC=1.2.1.4 {ECO:0000313|EMBL:EYR80308.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
aldehyde dehydrogenase; K14519 NADP-dependent aldehyde dehydrogenase [EC:1.2.1.4]
NADP-dependent fatty aldehyde dehydrogenase AldH n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CVV8_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1143_curated_37
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35717..36757
DNA (1041bp) protein (347aa)
Malate/L-lactate dehydrogenase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D0E6_9RHIZ
Malate/L-lactate dehydrogenase {ECO:0000313|EMBL:EYR80307.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
malate/L-lactate dehydrogenase
SCNpilot_expt_1000_bf_scaffold_1143_curated_38
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36800..37966)
DNA (1167bp) protein (389aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7UBH6_RHIRD
Uncharacterized protein {ECO:0000313|EMBL:EYR80555.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
conserved exported protein of unknown function
SCNpilot_expt_1000_bf_scaffold_1143_curated_39
unknown

Not on your lists

38215..38505
DNA (291bp) protein (97aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1143_curated_40
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(38645..39607)
DNA (963bp) protein (321aa)
Dihydrodipicolinate synthase (EC:4.2.1.52); K01714 dihydrodipicolinate synthase [EC:4.2.1.52]
Dihydrodipicolinate synthase/N-acetylneuraminate lyase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CBI7_9RHIZ
Dihydrodipicolinate synthase/N-acetylneuraminate lyase {ECO:0000313|EMBL:EYR80305.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_1143_curated_41
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(39725..40420)
DNA (696bp) protein (232aa)
GntR family transcriptional regulator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ETA8_9RHIZ
GntR family transcriptional regulator {ECO:0000313|EMBL:EYR80304.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1143_curated_42
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40608..40958
DNA (351bp) protein (117aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00037FFDA1
Ribosomal protein P2 {ECO:0000313|EMBL:CDN48807.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1143_curated_43
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

41000..41458
DNA (459bp) protein (153aa)
signal peptide protein n=1 Tax=Rhizobium sp. JGI 0001005-K05 RepID=UPI00035D1C4B
Uncharacterized protein {ECO:0000313|EMBL:EJJ29214.1}; Flags: Precursor;; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1143_curated_44
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(41706..44054)
DNA (2349bp) protein (783aa)
Glucose dehydrogenase {ECO:0000313|EMBL:KGD95026.1}; EC=1.1.5.2 {ECO:0000313|EMBL:KGD95026.1};; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
gcd; Quinoprotein glucose dehydrogenase (EC:1.1.5.2)
Membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family n=1 Tax=Rhizobium sp. CF080 RepID=J2R091_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1143_curated_45
unknown

Not on your lists

comp(44246..44422)
DNA (177bp) protein (59aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1143_curated_46
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(44495..45505)
DNA (1011bp) protein (337aa)
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI0003742884
GGDEF domain protein {ECO:0000313|EMBL:KFC71284.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
NMT1/THI5 like domain-containing protein; K15598 putative hydroxymethylpyrimidine transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_1143_curated_47
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(45505..46263)
DNA (759bp) protein (253aa)
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI0003707548
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KKB06902.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
ABC transporter; K15600 putative hydroxymethylpyrimidine transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_1143_curated_48
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(46260..47069)
DNA (810bp) protein (270aa)
UPI0003CF8BE9 related cluster n=1 Tax=unknown RepID=UPI0003CF8BE9
Uncharacterized protein {ECO:0000313|EMBL:KKB86674.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
binding-protein-dependent transport systems inner membrane component; K15599 putative hydroxymethylpyrimidine transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1143_curated_49
Mesorhizobium sp. LSHC422A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(47100..47708)
DNA (609bp) protein (203aa)
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI000370F04F
Uncharacterized protein {ECO:0000313|EMBL:ESX59772.1}; TaxID=1287294 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC422A00.;"
YKOF-like protein
SCNpilot_expt_1000_bf_scaffold_1143_curated_50
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(47875..48099)
DNA (225bp) protein (75aa)
Uncharacterized protein n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM2304) RepID=B5ZU05_RHILW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACI55564.1}; TaxID=395492 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM2304).;"
SCNpilot_expt_1000_bf_scaffold_1143_curated_51
Paracoccus sp. 10990, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(48154..48981)
DNA (828bp) protein (276aa)
hypothetical protein n=1 Tax=Meganema perideroedes RepID=UPI00037882F2
IclR family transcriptional regulator {ECO:0000313|EMBL:KGJ19525.1}; TaxID=1525716 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus sp. 10990.;"
IclR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1143_curated_52
Paracoccus sp. 10990, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

49114..49851
DNA (738bp) protein (246aa)
oxidoreductase n=1 Tax=Meganema perideroedes RepID=UPI000372B081
Oxidoreductase {ECO:0000313|EMBL:KGJ19524.1}; TaxID=1525716 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus sp. 10990.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_expt_1000_bf_scaffold_1143_curated_53
Paracoccus halophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

49886..50716
DNA (831bp) protein (277aa)
hypothetical protein n=1 Tax=Meganema perideroedes RepID=UPI00036FE3FE
Amidohydrolase {ECO:0000313|EMBL:KGJ04646.1}; TaxID=376733 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus halophilus.;"
amidohydrolase 2; K07046
SCNpilot_expt_1000_bf_scaffold_1143_curated_54
Paracoccus halophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

50713..52218
DNA (1506bp) protein (502aa)
Monosaccharide-transporting ATPase {ECO:0000256|SAAS:SAAS00041637}; EC=3.6.3.17 {ECO:0000256|SAAS:SAAS00041637};; TaxID=376733 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus halophilus.;"
sugar ABC transporter ATPase; K10441 ribose transport system ATP-binding protein [EC:3.6.3.17]
ABC sugar transporter, ATPase subunit protein n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CIL9_9RHOB
SCNpilot_expt_1000_bf_scaffold_1143_curated_55
Paracoccus halophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

52244..53257
DNA (1014bp) protein (338aa)
ribose ABC transporter permease n=1 Tax=Pannonibacter phragmitetus RepID=UPI00036086E6
Ribose ABC transporter permease {ECO:0000313|EMBL:KGJ04644.1}; TaxID=376733 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus halophilus.;"
sugar ABC transporter permease; K10440 ribose transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1143_curated_56
Paracoccus sp. 39524, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

53301..54245
DNA (945bp) protein (315aa)
LacI family transcriptional regulator n=1 Tax=Hoeflea sp. 108 RepID=UPI000369D647
LacI family transcriptional regulator {ECO:0000313|EMBL:KGJ16649.1}; TaxID=1525718 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus sp. 39524.;"
sugar ABC transporter substrate-binding protein; K10439 ribose transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_1143_curated_57
unknown

Not on your lists

comp(54284..54736)
DNA (453bp) protein (151aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1143_curated_58
Acinetobacter bereziniae, Acinetobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

55011..55142
DNA (132bp) protein (44aa)
ureidoglycolate lyase n=1 Tax=Meganema perideroedes RepID=UPI000376CF26
Uncharacterized protein {ECO:0000313|EMBL:ENV23562.1}; TaxID=1217651 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter.;" source="Acinetobacter bereziniae NIPH 3.;"
2-keto-4-pentenoate hydratase
SCNpilot_expt_1000_bf_scaffold_1143_curated_59
Paracoccus sp. 39524, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

55139..55375
DNA (237bp) protein (79aa)
fuconate dehydratase n=1 Tax=Pannonibacter phragmitetus RepID=UPI000369DA7D
Fuconate dehydratase {ECO:0000313|EMBL:KGJ16648.1}; TaxID=1525718 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus sp. 39524.;"
similar to enolase superfamily member 1 isoform rTS beta
Displaying items 31-59 of 59 in total

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