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SCNpilot_expt_1000_bf_scaffold_13955_curated

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_13955_curated_1
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..864)
DNA (864bp) protein (288aa)
Glutamine synthetase {ECO:0000256|RuleBase:RU004356}; EC=6.3.1.2 {ECO:0000256|RuleBase:RU004356};; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
glnA; glutamine synthetase; K01915 glutamine synthetase [EC:6.3.1.2] rbh
Glutamine synthetase n=1 Tax=Rhizobium sp. RepID=L0NEK1_RHISP
SCNpilot_expt_1000_bf_scaffold_13955_curated_2
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(931..1269)
DNA (339bp) protein (113aa)
nitrogen regulatory protein P-II 1 n=1 Tax=Rhizobium giardinii RepID=UPI000367F490
glnB; nitrogen regulatory protein PII; K04751 nitrogen regulatory protein P-II 1
Nitrogen regulatory protein P-II {ECO:0000313|EMBL:EHH04309.1}; TaxID=1082932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens CCNWGS0286.;"
SCNpilot_expt_1000_bf_scaffold_13955_curated_3
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2043..3080
DNA (1038bp) protein (346aa)
YjeF-like protein, hydroxyethylthiazole kinase-related protein n=1 Tax=Rhizobium sp. CF142 RepID=J1TI91_9RHIZ
YjeF-like protein, hydroxyethylthiazole kinase-related protein {ECO:0000313|EMBL:EJJ31666.1}; Flags: Precursor;; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
carbohydrate kinase
SCNpilot_expt_1000_bf_scaffold_13955_curated_4
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3058..3441)
DNA (384bp) protein (128aa)
Sulfoxide reductase heme-binding subunit YedZ n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3I0R1_9RHIZ
Sulfoxide reductase heme-binding subunit YedZ {ECO:0000256|HAMAP-Rule:MF_01207, ECO:0000256|SAAS:SAAS00016679}; Flavocytochrome YedZ {ECO:0000256|HAMAP-Rule:MF_01207}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
sulfite oxidase subunit YedZ
SCNpilot_expt_1000_bf_scaffold_13955_curated_5
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3683..4630)
DNA (948bp) protein (316aa)
Sulfoxide reductase catalytic subunit YedY {ECO:0000256|HAMAP-Rule:MF_01206, ECO:0000256|SAAS:SAAS00016472}; EC=1.8.-.- {ECO:0000256|HAMAP-Rule:MF_01206, ECO:0000256|SAAS:SAAS00016459};; Flags: Precursor;; TaxID=755176 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae WSM1455.;"
Sulfoxide reductase catalytic subunit YedY n=1 Tax=Rhizobium leguminosarum bv. viciae WSM1455 RepID=J0K115_RHILV
putative sulfite oxidase subunit YedY; K07147
SCNpilot_expt_1000_bf_scaffold_13955_curated_6
unknown

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comp(4694..4915)
DNA (222bp) protein (74aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_13955_curated_7
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4900..5649)
DNA (750bp) protein (250aa)
Uncharacterized protein n=1 Tax=Pseudomonas putida S11 RepID=J8V3X8_PSEPU
Uncharacterized protein {ECO:0000313|EMBL:EJT84489.1}; TaxID=1218169 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida S11.;"
SCNpilot_expt_1000_bf_scaffold_13955_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6617..6760
DNA (144bp) protein (48aa)
Dihydroxy-acid dehydratase {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040}; Short=DAD {ECO:0000256|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ilvD; dihydroxy-acid dehydratase (EC:4.2.1.9); K01687 dihydroxy-acid dehydratase [EC:4.2.1.9]
Dihydroxy-acid dehydratase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C7D7_9RHIZ
SCNpilot_expt_1000_bf_scaffold_13955_curated_9
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6940..7290)
DNA (351bp) protein (117aa)
Uncharacterized protein n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HJ71_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:AJD40955.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_13955_curated_10
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7540..8943
DNA (1404bp) protein (468aa)
degQ; protease DegQ precursor (EC:3.4.21.-); K01362 [EC:3.4.21.-]
Periplasmic serine protease, Do/DeqQ family n=1 Tax=Rhizobium leguminosarum bv. viciae WSM1455 RepID=J0VCX1_RHILV
Periplasmic serine protease, Do/DeqQ family {ECO:0000313|EMBL:EJC70638.1}; Flags: Precursor;; TaxID=755176 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae WSM1455.;"
SCNpilot_expt_1000_bf_scaffold_13955_curated_11
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8940..9194
DNA (255bp) protein (85aa)
ATPase AAA n=1 Tax=Hoeflea sp. 108 RepID=UPI000379E554
recombination factor protein RarA; K07478 putative ATPase
AAA ATPase {ECO:0000313|EMBL:BAF88525.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
Displaying 11 items

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