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SCNpilot_expt_1000_bf_scaffold_1254_curated

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1254_curated_1
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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50..367
DNA (318bp) protein (106aa)
Stress responsive A/B Barrel Domain-containing protein n=1 Tax=Rhizobium sp. AP16 RepID=J2LBT6_9RHIZ
Stress responsive A/B Barrel Domain-containing protein {ECO:0000313|EMBL:EJK84931.1}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1254_curated_2
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

583..1269
DNA (687bp) protein (229aa)
Transcriptional regulator, PadR-like family n=1 Tax=Rhizobium sp. RepID=L0NG51_RHISP
Transcriptional regulator, PadR family {ECO:0000313|EMBL:CDN53701.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
padR; transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1254_curated_3
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1448..2608
DNA (1161bp) protein (387aa)
Phage head portal protein n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3IJI0_9RHIZ
Phage head portal protein {ECO:0000313|EMBL:EPE99013.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
gp34; phage head portal protein
SCNpilot_expt_1000_bf_scaffold_1254_curated_4
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2795..3115
DNA (321bp) protein (107aa)
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00037017CB
Uncharacterized protein {ECO:0000313|EMBL:EPE99014.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
conserved membrane protein of unknown function
SCNpilot_expt_1000_bf_scaffold_1254_curated_5
Agrobacterium arsenijevicii, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3141..3722
DNA (582bp) protein (194aa)
Phage prohead protease n=1 Tax=Agrobacterium sp. (strain H13-3) RepID=F0L8J4_AGRSH
Primosomal replication protein N {ECO:0000313|EMBL:KJF71121.1}; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. KFB 330.;"
gp35; phage prohead protease; K06904
SCNpilot_expt_1000_bf_scaffold_1254_curated_6
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3727..4977
DNA (1251bp) protein (417aa)
Phage phi-C31 major capsid gp36-like protein n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3I1C4_9RHIZ
Phage phi-C31 major capsid gp36-like protein {ECO:0000313|EMBL:EPE99016.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
phage major capsid protein HK97 family
SCNpilot_expt_1000_bf_scaffold_1254_curated_7
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5053..5616
DNA (564bp) protein (188aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF080 RepID=J3CKA5_9RHIZ
Bacteriophage QLRG family DNA packaging {ECO:0000313|EMBL:EUB95255.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1254_curated_8
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5619..5954
DNA (336bp) protein (112aa)
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI000374735E
Phage head-tail adaptor {ECO:0000313|EMBL:EPE99018.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
phage head-tail adaptor
SCNpilot_expt_1000_bf_scaffold_1254_curated_9
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5951..6349
DNA (399bp) protein (133aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7U7N9_RHIRD
Gene transfer agent (GTA) like protein {ECO:0000313|EMBL:CDN53217.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1254_curated_10
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6371..7588)
DNA (1218bp) protein (406aa)
Putative transporter, permease protein n=1 Tax=Rhizobium etli (strain CFN 42 / ATCC 51251) RepID=Q2KAP7_RHIEC
transporter, permease
Putative transporter, permease protein {ECO:0000313|EMBL:ABC90089.1}; TaxID=347834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CFN 42 / ATCC 51251).;"
SCNpilot_expt_1000_bf_scaffold_1254_curated_11
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7698..8105
DNA (408bp) protein (136aa)
Phage major tail protein, TP901-1 family n=1 Tax=Rhizobium sp. CF080 RepID=J2RSR3_9RHIZ
Phage major tail protein, TP901-1 family {ECO:0000313|EMBL:EUB95249.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
Phage major tail protein
SCNpilot_expt_1000_bf_scaffold_1254_curated_12
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8105..8473
DNA (369bp) protein (123aa)
Putative uncharacterized protein n=1 Tax=Agrobacterium sp. ATCC 31749 RepID=F5J7Z8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CDN91433.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1254_curated_13
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8524..8694
DNA (171bp) protein (57aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI000376D22B
Uncharacterized protein {ECO:0000313|EMBL:EPE99024.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
SCNpilot_expt_1000_bf_scaffold_1254_curated_14
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8697..9269
DNA (573bp) protein (191aa)
tail protein n=1 Tax=Rhizobium radiobacter RepID=UPI000365DE71
Tail protein {ECO:0000313|EMBL:KDR88819.1}; TaxID=1315272 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens GW4.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1254_curated_15
Rhizobium nepotum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9280..9912
DNA (633bp) protein (211aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens (strain C58 / ATCC 33970) RepID=A9CJN6_AGRT5
Glycoside hydrolase family 24 {ECO:0000313|EMBL:KJF69503.1}; TaxID=1368418 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium nepotum 39/7.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1254_curated_16
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9909..10793
DNA (885bp) protein (295aa)
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI0003635477
Beta tubulin, autoregulation binding site {ECO:0000313|EMBL:CDN53226.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1254_curated_17
Rhizobium sp. IRBG74, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10790..11215
DNA (426bp) protein (142aa)
Putative phage cell wall peptidase, NlpC/P60 family n=1 Tax=Rhizobium sp. IRBG74 RepID=U4Q5P3_9RHIZ
putative phage cell wall peptidase, NlpC/P60 family
Putative phage cell wall peptidase, NlpC/P60 family {ECO:0000313|EMBL:CDI07865.1}; TaxID=424182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. IRBG74.;"
SCNpilot_expt_1000_bf_scaffold_1254_curated_18
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11225..15067
DNA (3843bp) protein (1281aa)
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI000368C8BF
Uncharacterized protein {ECO:0000313|EMBL:CCF18636.1}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1254_curated_19
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15086..15307
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9JU39_AGRVS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM35967.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCNpilot_expt_1000_bf_scaffold_1254_curated_20
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15508..15756
DNA (249bp) protein (83aa)
signal peptide protein n=1 Tax=Rhizobium mongolense RepID=UPI0003B706F0
Uncharacterized protein {ECO:0000313|EMBL:AJD40560.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1254_curated_21
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15802..16473
DNA (672bp) protein (224aa)
Two component response regulator n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7U7M5_RHIRD
Two component response regulator {ECO:0000313|EMBL:EGP57630.1}; TaxID=1050720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens F2.;"
feuP; Two-component transcriptional regulator of cyclic glucans
SCNpilot_expt_1000_bf_scaffold_1254_curated_22
unknown

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comp(16415..17401)
DNA (987bp) protein (329aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1254_curated_23
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17658..17954
DNA (297bp) protein (99aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
Two-component sensor histidine kinase protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JBL0_AGRRK
feuQ; two-component sensor histidine kinase
SCNpilot_expt_1000_bf_scaffold_1254_curated_24
unknown

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17966..18187
DNA (222bp) protein (74aa)

This feature has no annotations

Displaying 24 items

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