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SCNpilot_expt_1000_bf_scaffold_1074_curated

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1074_curated_1
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..218)
DNA (216bp) protein (72aa)
class III aminotransferase; K00823 4-aminobutyrate aminotransferase [EC:2.6.1.19]
Aminotransferase class-III n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TC78_MESCW
Aminotransferase like protein {ECO:0000313|EMBL:AHK47617.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
SCNpilot_expt_1000_bf_scaffold_1074_curated_2
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

340..1227
DNA (888bp) protein (296aa)
LysR family transcriptional regulator n=1 Tax=Rhizobium meliloti RepID=UPI00037FD1C8
Putative transcriptional regulator, LysR family {ECO:0000313|EMBL:AHK47618.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
LysR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1074_curated_3
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1334..2035
DNA (702bp) protein (234aa)
Chaperone protein HtpG n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TKL9_TISMK
chaperone protein HtpG
Chaperone protein HtpG {ECO:0000313|EMBL:AFK53307.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
SCNpilot_expt_1000_bf_scaffold_1074_curated_4
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2041..4818
DNA (2778bp) protein (926aa)
molybdopterin oxidoreductase, iron-sulfur binding subunit; K00184 molybdopterin oxidoreductase, iron-sulfur binding subunit [EC:1.2.7.-]
Molybdopterin oxidoreductase, iron-sulfur binding subunit n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM1325) RepID=C6B8I5_RHILS
Molybdopterin oxidoreductase, iron-sulfur binding subunit {ECO:0000313|EMBL:ACS60717.1}; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
SCNpilot_expt_1000_bf_scaffold_1074_curated_5
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5829..6152
DNA (324bp) protein (108aa)
polysulfide reductase NrfD; K00185 molybdopterin oxidoreductase, membrane subunit [EC:1.2.7.-]
Polysulphide reductase NrfD n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM1325) RepID=C6B8I4_RHILS
Polysulphide reductase NrfD {ECO:0000313|EMBL:ACS60716.1}; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
SCNpilot_expt_1000_bf_scaffold_1074_curated_6
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6145..6441
DNA (297bp) protein (99aa)
Transmembrane prediction n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM1325) RepID=C6B8I3_RHILS
transmembrane prediction
Transmembrane prediction {ECO:0000313|EMBL:ACS60715.1}; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
SCNpilot_expt_1000_bf_scaffold_1074_curated_7
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6434..6688
DNA (255bp) protein (85aa)
Transmembrane prediction n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TKM3_TISMK
transmembrane prediction
Transmembrane prediction {ECO:0000313|EMBL:AFK53311.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
SCNpilot_expt_1000_bf_scaffold_1074_curated_8
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6685..8205
DNA (1521bp) protein (507aa)
Uncharacterized protein n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM1325) RepID=C6B8I1_RHILS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACS60713.1}; Flags: Precursor;; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
SCNpilot_expt_1000_bf_scaffold_1074_curated_9
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8202..8555
DNA (354bp) protein (118aa)
Uncharacterized protein n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM1325) RepID=C6B8I0_RHILS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACS60712.1}; Flags: Precursor;; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
SCNpilot_expt_1000_bf_scaffold_1074_curated_10
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8555..9349
DNA (795bp) protein (265aa)
Electron transport protein SCO1/SenC n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM1325) RepID=C6B8H9_RHILS
electron transport protein SCO1/SenC; K07152
Electron transport protein SCO1/SenC {ECO:0000313|EMBL:ACS60711.1}; Flags: Precursor;; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
SCNpilot_expt_1000_bf_scaffold_1074_curated_11
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9521..10279
DNA (759bp) protein (253aa)
cytochrome c oxidase, subunit II; K02275 cytochrome c oxidase subunit II [EC:1.9.3.1]
Cytochrome c oxidase, subunit II n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM1325) RepID=C6B8H8_RHILS
Cytochrome c oxidase, subunit II {ECO:0000313|EMBL:ACS60710.1}; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
SCNpilot_expt_1000_bf_scaffold_1074_curated_12
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10263..11927
DNA (1665bp) protein (555aa)
cytochrome c oxidase, subunit I (EC:1.9.3.1); K02274 cytochrome c oxidase subunit I [EC:1.9.3.1]
Cytochrome c oxidase, subunit I {ECO:0000313|EMBL:ACS60709.1}; EC=1.9.3.1 {ECO:0000313|EMBL:ACS60709.1};; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
Cytochrome c oxidase, subunit I n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM1325) RepID=C6B8H7_RHILS
SCNpilot_expt_1000_bf_scaffold_1074_curated_13
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11924..12559
DNA (636bp) protein (212aa)
cytochrome c oxidase subunit III; K02276 cytochrome c oxidase subunit III [EC:1.9.3.1]
Cytochrome c oxidase subunit III n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM1325) RepID=C6B8H6_RHILS
Cytochrome c oxidase subunit III {ECO:0000313|EMBL:ACS60708.1}; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
SCNpilot_expt_1000_bf_scaffold_1074_curated_14
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12566..12835
DNA (270bp) protein (90aa)
Caa(3)-type oxidase, subunit IV n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TKN2_TISMK
caa(3)-type oxidase, subunit IV
Caa(3)-type oxidase, subunit IV {ECO:0000313|EMBL:AFK53320.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
SCNpilot_expt_1000_bf_scaffold_1074_curated_15
unknown

Not on your lists

12855..13121
DNA (267bp) protein (89aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1074_curated_16
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13179..15353)
DNA (2175bp) protein (725aa)
Catalase-peroxidase {ECO:0000256|HAMAP-Rule:MF_01961, ECO:0000256|RuleBase:RU003451}; Short=CP {ECO:0000256|HAMAP-Rule:MF_01961};; EC=1.11.1.21 {ECO:0000256|HAMAP-Rule:MF_01961, ECO:0000256|RuleBase:RU003451};; Peroxidase/catalase {ECO:0000256|HAMAP-Rule:MF_01961}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
katA; catalase; K03782 catalase-peroxidase [EC:1.11.1.21] rbh
Catalase-peroxidase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EV75_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1074_curated_17
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15520..16467
DNA (948bp) protein (316aa)
Hydrogen peroxide-inducible activator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CY12_9RHIZ
Transcriptional regulator, LysR family {ECO:0000313|EMBL:AHK47030.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
oxyR; LysR family transcriptional regulator; K04761 LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator rbh
SCNpilot_expt_1000_bf_scaffold_1074_curated_18
unknown

Not on your lists

comp(16520..16609)
DNA (90bp) protein (30aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1074_curated_19
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16682..17446)
DNA (765bp) protein (255aa)
Arginine/ornithine transport ATP-binding protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V2M7_9RHIZ
Amino acid transporter {ECO:0000313|EMBL:KDP72851.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
hisP; histidine/lysine/arginine/ornithine ABC transporter; ATP-binding component
SCNpilot_expt_1000_bf_scaffold_1074_curated_20
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17483..18184)
DNA (702bp) protein (234aa)
Putative amino acid transport protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6U666_9RHIZ
ABC transporter permease {ECO:0000313|EMBL:KDP72850.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
putative binding-protein-dependent transport system protein; K02029 polar amino acid transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1074_curated_21
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18184..18897)
DNA (714bp) protein (238aa)
Polar amino acid ABC transporter, inner membrane subunit n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UD45_9RHIZ
Polar amino acid ABC transporter permease {ECO:0000313|EMBL:KDP72849.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
Histidine ABC transporter, permease protein HisQ
SCNpilot_expt_1000_bf_scaffold_1074_curated_22
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19031..19831)
DNA (801bp) protein (267aa)
Lysine-, arginine-, ornithine-binding protein periplasmic protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6VAL7_9RHIZ
Amino acid ABC transporter substrate-binding protein {ECO:0000313|EMBL:KDP72848.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
periplasmic component of amino acid ABC-type transporter/signal transduction system
SCNpilot_expt_1000_bf_scaffold_1074_curated_23
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19856..20659)
DNA (804bp) protein (268aa)
NG,NG-dimethylarginine dimethylaminohydrolase (dimethylargininase) protein (EC:3.5.3.18)
NG,NG-dimethylarginine dimethylaminohydrolase n=1 Tax=Rhizobium meliloti RepID=UPI0002DABCB6
Dimethylarginine dimethylaminohydrolase {ECO:0000313|EMBL:KDP72847.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
SCNpilot_expt_1000_bf_scaffold_1074_curated_24
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20693..21622)
DNA (930bp) protein (310aa)
Amidinotransferase n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V4Q1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:AHK45633.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
amidinotransferase
SCNpilot_expt_1000_bf_scaffold_1074_curated_25
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21891..22316
DNA (426bp) protein (142aa)
AsnC family transcriptional regulator n=1 Tax=Novispirillum itersonii RepID=UPI00036C1FA2
AsnC family transcriptional regulator {ECO:0000313|EMBL:KDP72844.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
transcriptional regulator, AsnC family
SCNpilot_expt_1000_bf_scaffold_1074_curated_26
Brucella inopinata, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22313..23035)
DNA (723bp) protein (241aa)
GntR family transcriptional regulator n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002F2263C
Histidine utilization repressor {ECO:0000313|EMBL:EFM56062.1}; TaxID=470735 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella inopinata BO1.;"
UbiC transcription regulator-associated domain-containing protein
SCNpilot_expt_1000_bf_scaffold_1074_curated_27
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23337..24509
DNA (1173bp) protein (391aa)
acyl-CoA transferase n=1 Tax=Paracoccus sp. N5 RepID=UPI000368B1FC
L-carnitine dehydratase/bile acid-inducible protein F
L-carnitine dehydratase/bile acid-inducible protein F {ECO:0000313|EMBL:ABL68825.1}; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
SCNpilot_expt_1000_bf_scaffold_1074_curated_28
Paracoccus versutus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24506..25660
DNA (1155bp) protein (385aa)
butyryl-CoA dehydrogenase; K00248 butyryl-CoA dehydrogenase [EC:1.3.8.1]
acyl-CoA dehydrogenase n=1 Tax=Paracoccus sp. TRP RepID=UPI000225FB43
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:KGJ11312.1}; TaxID=34007 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus versutus (Thiobacillus versutus).;"
SCNpilot_expt_1000_bf_scaffold_1074_curated_29
Brucella inopinata, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25726..26544
DNA (819bp) protein (273aa)
amino acid ABC transporter n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002F447F3
Extracellular solute-binding protein {ECO:0000313|EMBL:EFM56059.1}; TaxID=470735 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella inopinata BO1.;"
extracellular solute-binding protein
SCNpilot_expt_1000_bf_scaffold_1074_curated_30
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26675..27322
DNA (648bp) protein (216aa)
Amino acid ABC transporter membrane protein 1, PAAT family n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1AZY5_PARDP
polar amino acid ABC transporter inner membrane subunit
Amino acid ABC transporter membrane protein 1, PAAT family {ECO:0000313|EMBL:ABL68829.1}; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
Displaying items 1-30 of 35 in total

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