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SCNpilot_expt_1000_bf_scaffold_4539_curated

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4539_curated_1
Brucella microti, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..395)
DNA (393bp) protein (131aa)
methylmalonate-semialdehyde dehydrogenase; K00140 malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
Methylmalonic acid semialdehyde dehydrogenase {ECO:0000313|EMBL:ACU48798.1}; EC=1.2.1.27 {ECO:0000313|EMBL:ACU48798.1};; TaxID=568815 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella microti (strain CCM 4915).;"
Methylmalonate-semialdehyde dehydrogenase (Acylating) n=15 Tax=Brucella ovis RepID=A5VSH2_BRUO2
SCNpilot_expt_1000_bf_scaffold_4539_curated_2
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

685..1563
DNA (879bp) protein (293aa)
Transcriptional regulator n=1 Tax=Phyllobacterium sp. YR531 RepID=J2VZ85_9RHIZ
Transcriptional regulator {ECO:0000313|EMBL:EJN05540.1}; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
LysR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_4539_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1972..4050
DNA (2079bp) protein (693aa)
Methyl-accepting chemotaxis protein n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2PEG6_9RHIZ
Chemoreceptor McpA {ECO:0000313|EMBL:EYR82171.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
mcpA; methyl-accepting chemotaxis protein; K03406 methyl-accepting chemotaxis protein
SCNpilot_expt_1000_bf_scaffold_4539_curated_4
Rhizobium sp. H41, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4195..4440
DNA (246bp) protein (82aa)
Uncharacterized protein n=2 Tax=Rhizobium RepID=U4Q7P6_9RHIZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KGE80225.1}; TaxID=1510041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. H41.;"
SCNpilot_expt_1000_bf_scaffold_4539_curated_5
unknown

Not on your lists

comp(4660..5310)
DNA (651bp) protein (217aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4539_curated_6
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5583..6257
DNA (675bp) protein (225aa)
UPI0003CFD76E related cluster n=1 Tax=unknown RepID=UPI0003CFD76E
Uncharacterized protein {ECO:0000313|EMBL:CDX40623.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4539_curated_7
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6539..6877
DNA (339bp) protein (113aa)
Uncharacterized protein n=6 Tax=Rhizobium meliloti RepID=F6BVY1_SINMB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEG05027.1}; TaxID=698936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain BL225C).;"
SCNpilot_expt_1000_bf_scaffold_4539_curated_8
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6965..7198)
DNA (234bp) protein (78aa)
Uncharacterized protein n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3X507_RHIFR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFL50963.1}; TaxID=1185652 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium fredii USDA 257.;"
SCNpilot_expt_1000_bf_scaffold_4539_curated_9
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7496..8401
DNA (906bp) protein (302aa)
Bifunctional mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase protein {ECO:0000313|EMBL:AJD42298.1}; EC=2.7.7.13 {ECO:0000313|EMBL:AJD42298.1};; EC=5.3.1.8 {ECO:0000313|EMBL:AJD42298.1};; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; K00971 mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JA96_AGRRK
SCNpilot_expt_1000_bf_scaffold_4539_curated_10
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8398..8901
DNA (504bp) protein (168aa)
bifunctional mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase protein (EC:5.3.1.8 2.7.7.13)
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase n=1 Tax=Rhizobium sp. CF142 RepID=J1T418_9RHIZ
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase {ECO:0000313|EMBL:EJJ26386.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
SCNpilot_expt_1000_bf_scaffold_4539_curated_11
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8959..9408)
DNA (450bp) protein (150aa)
Uncharacterized protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K1W3_AGRVS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM38861.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCNpilot_expt_1000_bf_scaffold_4539_curated_12
unknown

Not on your lists

comp(9409..9624)
DNA (216bp) protein (72aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4539_curated_13
Legionella norrlandica, Legionella, Legionellales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9707..10195)
DNA (489bp) protein (163aa)
hypothetical protein n=1 Tax=Amphritea japonica RepID=UPI00036FCB11
AsnC family transcriptional regulator {ECO:0000313|EMBL:KGP62855.1}; TaxID=1498499 species="Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella.;" source="Legionella norrlandica.;"
Uncharacterized HTH-type transcriptional regulator y4tD
SCNpilot_expt_1000_bf_scaffold_4539_curated_14
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10422..11564
DNA (1143bp) protein (381aa)
Cys; K01739 cystathionine gamma-synthase [EC:2.5.1.48]
Cys n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IR74_RHOCS
Cys {ECO:0000313|EMBL:ACI97960.1}; TaxID=414684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
SCNpilot_expt_1000_bf_scaffold_4539_curated_15
Rahnella aquatilis, Rahnella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11588..13162
DNA (1575bp) protein (525aa)
Extracellular solute-binding protein family 5 n=2 Tax=Rahnella RepID=E8XXV5_RAHSY
family 5 extracellular solute-binding protein; K02035 peptide/nickel transport system substrate-binding protein
Family 5 extracellular solute-binding protein {ECO:0000313|EMBL:AFE57933.1}; TaxID=1151116 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Rahnella.;" source="Rahnella aquatilis HX2.;"
SCNpilot_expt_1000_bf_scaffold_4539_curated_16
Pantoea sp. At-9b, Pantoea, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13541..14488
DNA (948bp) protein (316aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Pantoea sp. (strain At-9b) RepID=E6WH29_PANSA
binding-protein-dependent transporter inner membrane component; K02033 peptide/nickel transport system permease protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ADU71017.1}; Flags: Precursor;; TaxID=592316 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pantoea.;" source="Pantoea sp. (strain At-9b).;"
SCNpilot_expt_1000_bf_scaffold_4539_curated_17
Desulfococcus multivorans, Desulfococcus, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14494..15264
DNA (771bp) protein (257aa)
ABC-type transporter, integral membrane subunit n=1 Tax=Desulfococcus multivorans DSM 2059 RepID=S7TC37_DESML
ABC-type transporter, integral membrane subunit {ECO:0000313|EMBL:EPR34110.1}; TaxID=1121405 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfococcus.;" source="Desulfococcus multivorans DSM 2059.;"
binding-protein-dependent transport system inner membrane protein; K02034 peptide/nickel transport system permease protein
SCNpilot_expt_1000_bf_scaffold_4539_curated_18
Ewingella americana, Ewingella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15270..16916
DNA (1647bp) protein (549aa)
Alpha-glucoside transport ATP-binding protein {ECO:0000313|EMBL:KFC83295.1}; EC=3.6.1.15 {ECO:0000313|EMBL:KFC83295.1};; EC=3.6.1.3 {ECO:0000313|EMBL:KFC83295.1};; TaxID=910964 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Ewingella.;" source="Ewingella americana ATCC 33852.;"
ABC transporter n=1 Tax=Rahnella aquatilis HX2 RepID=H8NQ42_RAHAQ
ABC transporter
SCNpilot_expt_1000_bf_scaffold_4539_curated_19
unknown

Not on your lists

17315..17692
DNA (378bp) protein (126aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4539_curated_20
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17711..18814)
DNA (1104bp) protein (368aa)
Putative cysteine synthase {ECO:0000313|EMBL:CCE04906.1}; EC=2.5.1.47 {ECO:0000313|EMBL:CCE04906.1};; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
cysteine synthase/cystathionine beta-synthase family protein; K01738 cysteine synthase A [EC:2.5.1.47]
Putative cysteine synthase n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TEN7_9BRAD
SCNpilot_expt_1000_bf_scaffold_4539_curated_21
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18841..19263)
DNA (423bp) protein (141aa)
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00036701A2
Strain MEJ076 contig_12, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ01843.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4539_curated_22
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19260..19514)
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM597 RepID=I9NHL9_RHILT
Uncharacterized protein {ECO:0000313|EMBL:EJB06227.1}; TaxID=754764 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM597.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4539_curated_23
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19714..20553)
DNA (840bp) protein (280aa)
Putative allantoin catabolism protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LW12_RHITR
putative allantoin catabolism protein
Putative allantoin catabolism protein {ECO:0000313|EMBL:AGB74344.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_4539_curated_24
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20982..21326
DNA (345bp) protein (115aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Rhizobium sp. RepID=L0NMB0_RHISP
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:CCF21946.1}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
glyoxalase/bleomycin resistance protein/dioxygenase
SCNpilot_expt_1000_bf_scaffold_4539_curated_25
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21392..22492
DNA (1101bp) protein (367aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Rhizobium sp. RepID=L0NMB0_RHISP
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:CCF21946.1}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
glyoxalase/bleomycin resistance protein/dioxygenase
SCNpilot_expt_1000_bf_scaffold_4539_curated_26
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22606..24399)
DNA (1794bp) protein (598aa)
Diguanylate cyclase n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HN39_9RHIZ
Putative response regulator/GGDEF domain transcriptional regulator {ECO:0000313|EMBL:AHK45406.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
diguanylate cyclase rbh
SCNpilot_expt_1000_bf_scaffold_4539_curated_27
Hoeflea sp. IMCC20628, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24580..25101
DNA (522bp) protein (174aa)
Acetyltransferase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CG89_9RHIZ
Acetyltransferase, ribosomal protein N-acetylase {ECO:0000313|EMBL:AKI03034.1}; TaxID=1620421 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. IMCC20628.;"
acetyltransferase
SCNpilot_expt_1000_bf_scaffold_4539_curated_28
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25104..25499)
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF122 RepID=J2I5F6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJL51095.1}; Flags: Precursor;; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4539_curated_29
unknown

Not on your lists

comp(25459..25602)
DNA (144bp) protein (48aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4539_curated_30
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25589..25870)
DNA (282bp) protein (94aa)
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI000371E4CA
Nucleotidyltransferase family protein {ECO:0000313|EMBL:EJL51094.1}; Flags: Precursor;; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
Displaying items 1-30 of 38 in total

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