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SCNpilot_expt_1000_bf_scaffold_2371_curated

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2371_curated_1
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..1254)
DNA (1254bp) protein (418aa)
gcvT6; aminomethyltransferase GcvT (EC:2.1.2.10)
Aminomethyltransferase GcvT {ECO:0000313|EMBL:AFL53523.1}; EC=2.1.2.10 {ECO:0000313|EMBL:AFL53523.1};; TaxID=1185652 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium fredii USDA 257.;"
Aminomethyltransferase GcvT n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3XCB7_RHIFR
SCNpilot_expt_1000_bf_scaffold_2371_curated_2
unknown

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comp(1339..2031)
DNA (693bp) protein (231aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2371_curated_3
Labrenzia alexandrii, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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2465..3601
DNA (1137bp) protein (379aa)
Cellulase (Glycosyl hydrolase family 5) n=1 Tax=Labrenzia alexandrii DFL-11 RepID=B9R4B2_9RHOB
Cellulase (Glycosyl hydrolase family 5) {ECO:0000313|EMBL:EEE46352.1}; TaxID=244592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia alexandrii (strain DSM 17067 / NCIMB 14079 / DFL-11); (Stappia alexandrii).;"
putative endoglucanase 3 precursor
SCNpilot_expt_1000_bf_scaffold_2371_curated_4
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3591..5180)
DNA (1590bp) protein (530aa)
Putative uncharacterized protein n=1 Tax=Labrenzia alexandrii DFL-11 RepID=B9R4A6_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KGT78564.1}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2371_curated_5
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5177..6364)
DNA (1188bp) protein (396aa)
Glycosyl transferase, group 1 n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2J1E3_RHOP2
group 1 glycosyl transferase
Glycosyl transferase, group 1 {ECO:0000313|EMBL:ABD05717.1}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
SCNpilot_expt_1000_bf_scaffold_2371_curated_6
Labrenzia alexandrii, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6555..8108)
DNA (1554bp) protein (518aa)
Putative uncharacterized protein n=1 Tax=Labrenzia alexandrii DFL-11 RepID=B9R4A9_9RHOB
Putative uncharacterized protein {ECO:0000313|EMBL:EEE44393.1}; TaxID=244592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia alexandrii (strain DSM 17067 / NCIMB 14079 / DFL-11); (Stappia alexandrii).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2371_curated_7
Labrenzia alexandrii, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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8244..9710
DNA (1467bp) protein (489aa)
Chain length determinant protein n=1 Tax=Labrenzia alexandrii DFL-11 RepID=B9R4B0_9RHOB
Chain length determinant protein {ECO:0000313|EMBL:EEE46343.1}; TaxID=244592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia alexandrii (strain DSM 17067 / NCIMB 14079 / DFL-11); (Stappia alexandrii).;"
lipopolysaccharide biosynthesis
SCNpilot_expt_1000_bf_scaffold_2371_curated_8
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10013..10843
DNA (831bp) protein (277aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0I3K1_9RHIZ
Beta-lactamase {ECO:0000313|EMBL:KDP72717.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
metal dependent beta lactamase rbh
SCNpilot_expt_1000_bf_scaffold_2371_curated_9
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10830..11576)
DNA (747bp) protein (249aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI0003777860
Putative uncharacterized protein {ECO:0000313|EMBL:EHK52454.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2371_curated_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11573..12664)
DNA (1092bp) protein (364aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00036BD20E
Glycosyltransferase {ECO:0000313|EMBL:EYR82955.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
glycosyltransferase
SCNpilot_expt_1000_bf_scaffold_2371_curated_11
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12695..13015)
DNA (321bp) protein (107aa)
exoB-3; UDP-glucose 4-epimerase 3 (EC:5.1.3.2)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI000308C05B
UDP-glucose-4-epimerase {ECO:0000313|EMBL:EJJ25731.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
SCNpilot_expt_1000_bf_scaffold_2371_curated_12
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12970..13686)
DNA (717bp) protein (239aa)
galE; UDP-glucose 4-epimerase; K01784 UDP-glucose 4-epimerase [EC:5.1.3.2]
UDP-glucose 4-epimerase n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI0003655184
UDP-glucose 4-epimerase {ECO:0000313|EMBL:EPE96035.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
SCNpilot_expt_1000_bf_scaffold_2371_curated_13
unknown

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comp(13793..13906)
DNA (114bp) protein (38aa)
cyclic nucleotide-binding protein n=1 Tax=Rhizobium giardinii RepID=UPI0003718F24
Displaying 13 items

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