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SCNpilot_expt_1000_bf_scaffold_6295_curated

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_6295_curated_1
Ochrobactrum intermedium, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17..835)
DNA (819bp) protein (273aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00037E0FCA
Uncharacterized protein {ECO:0000313|EMBL:ELT47402.1}; TaxID=1234597 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium M86.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6295_curated_2
Roseibium sp. TrichSKD4, Roseibium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(832..1578)
DNA (747bp) protein (249aa)
PmgT n=1 Tax=Roseibium sp. TrichSKD4 RepID=E2CD22_9RHOB
PmgT {ECO:0000313|EMBL:EFO33804.1}; TaxID=744980 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseibium.;" source="Roseibium sp. TrichSKD4.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6295_curated_3
Brevundimonas subvibrioides, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1575..2492)
DNA (918bp) protein (306aa)
Gp37Gp68 family protein n=1 Tax=Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903 / NBRC 16000 / CB 81) RepID=D9QFV3_BRESC
Gp37Gp68 family protein
Gp37Gp68 family protein {ECO:0000313|EMBL:ADL00667.1}; TaxID=633149 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903; / NBRC 16000 / CB 81) (Caulobacter subvibrioides).;"
SCNpilot_expt_1000_bf_scaffold_6295_curated_4
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2789..3166)
DNA (378bp) protein (126aa)
hypothetical protein n=1 Tax=Vibrio vulnificus RepID=UPI000346182E
Strain MEJ076 contig_30, whole genome shotgun sequence {ECO:0000313|EMBL:KIP99105.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6295_curated_5
Agrobacterium sp. ATCC 31749, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3172..3714)
DNA (543bp) protein (181aa)
Putative uncharacterized protein n=1 Tax=Agrobacterium sp. ATCC 31749 RepID=F5JC08_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EGL64481.1}; TaxID=82789 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. ATCC 31749.;"
hypothetical protein; K06952
SCNpilot_expt_1000_bf_scaffold_6295_curated_6
Martelella endophytica, Martelella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3711..4532)
DNA (822bp) protein (274aa)
Uncharacterized protein {ECO:0000313|EMBL:AJY46852.1}; TaxID=1486262 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Martelella.;" source="Martelella endophytica.;"
SCNpilot_expt_1000_bf_scaffold_6295_curated_7
unknown

Not on your lists

comp(4539..4883)
DNA (345bp) protein (115aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6295_curated_8
unknown

Not on your lists

comp(4880..5269)
DNA (390bp) protein (130aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6295_curated_9
unknown

Not on your lists

comp(5266..5436)
DNA (171bp) protein (57aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6295_curated_10
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5539..5955)
DNA (417bp) protein (139aa)
Helix-turn-helix domain protein (Modular protein) n=1 Tax=Rhizobium sp. IRBG74 RepID=U4PU62_9RHIZ
Helix-turn-helix domain protein (Modular protein) {ECO:0000313|EMBL:CDN93687.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
Helix-turn-helix domain protein (modular protein)
SCNpilot_expt_1000_bf_scaffold_6295_curated_11
unknown

Not on your lists

comp(6026..6370)
DNA (345bp) protein (115aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6295_curated_12
unknown

Not on your lists

comp(6443..6631)
DNA (189bp) protein (63aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6295_curated_13
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7076..7852)
DNA (777bp) protein (259aa)
Putative phage repressor n=1 Tax=Sinorhizobium meliloti (strain AK83) RepID=F6DYV4_SINMK
Repressor protein C {ECO:0000313|EMBL:CDH84467.1}; TaxID=1401243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti RU11/001.;"
putative phage repressor
SCNpilot_expt_1000_bf_scaffold_6295_curated_14
unknown

Not on your lists

comp(8680..9366)
DNA (687bp) protein (229aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6295_curated_15
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9619..9795
DNA (177bp) protein (59aa)
hypothetical protein n=1 Tax=Rhizobium meliloti RepID=UPI000365FDA1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEH78720.1}; TaxID=707241 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain SM11).;"
SCNpilot_expt_1000_bf_scaffold_6295_curated_16
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10123..10365
DNA (243bp) protein (81aa)
Uncharacterized protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LM96_RHITR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGB71836.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_6295_curated_17
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10523..10969
DNA (447bp) protein (149aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HQX1_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK56833.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
SCNpilot_expt_1000_bf_scaffold_6295_curated_18
unknown

Not on your lists

11157..11393
DNA (237bp) protein (79aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6295_curated_19
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11390..12730
DNA (1341bp) protein (447aa)
hypothetical protein n=1 Tax=Rhizobium radiobacter RepID=UPI000370DE71
Uncharacterized protein {ECO:0000313|EMBL:EPR19738.1}; TaxID=1336745 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter DSM 30147.;"
dmnA; Methyltransferase-like protein KIAA1627
SCNpilot_expt_1000_bf_scaffold_6295_curated_20
unknown

Not on your lists

12727..13038
DNA (312bp) protein (104aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6295_curated_21

Not on your lists

13035..13793
DNA (759bp) protein (253aa)
C-5 cytosine-specific DNA methylase 1; K13581 modification methylase [EC:2.1.1.72]
C-5 cytosine-specific DNA methylase 1 n=1 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HGM3_ACHXA
Uncharacterized protein {ECO:0000313|EMBL:KKL28971.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
SCNpilot_expt_1000_bf_scaffold_6295_curated_22
Burkholderia sp. M701, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13790..14323
DNA (534bp) protein (178aa)
hypothetical protein n=1 Tax=Burkholderia glumae RepID=UPI00030526EA
Uncharacterized protein {ECO:0000313|EMBL:BAO18876.1}; TaxID=326454 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. M701.;"
SCNpilot_expt_1000_bf_scaffold_6295_curated_23
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14320..16242
DNA (1923bp) protein (641aa)
C-5 cytosine-specific DNA methylase; K00558 DNA (cytosine-5-)-methyltransferase [EC:2.1.1.37]
C-5 cytosine-specific DNA methylase n=1 Tax=Sinorhizobium meliloti (strain BL225C) RepID=F6BSA2_SINMB
C-5 cytosine-specific DNA methylase {ECO:0000313|EMBL:AEG04256.1}; TaxID=698936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain BL225C).;"
SCNpilot_expt_1000_bf_scaffold_6295_curated_24
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16239..16802
DNA (564bp) protein (188aa)
Uncharacterized protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LNZ7_RHITR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGB71834.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_6295_curated_25
unknown

Not on your lists

17263..17547
DNA (285bp) protein (95aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6295_curated_26
Agrobacterium fabrum, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17876..19057
DNA (1182bp) protein (394aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens (strain C58 / ATCC 33970) RepID=Q7D1F9_AGRT5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAK86265.2}; TaxID=176299 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium fabrum (strain C58 / ATCC 33970) (Agrobacterium; tumefaciens (strain C58)).;"
SCNpilot_expt_1000_bf_scaffold_6295_curated_27
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19057..19743
DNA (687bp) protein (229aa)
transcription antitermination protein NusG n=1 Tax=Rhizobium meliloti RepID=UPI0003732296
Uncharacterized protein {ECO:0000313|EMBL:KDR87210.1}; TaxID=1315272 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens GW4.;"
nusG1; Transcription antitermination protein nusG; K02601 transcriptional antiterminator NusG
SCNpilot_expt_1000_bf_scaffold_6295_curated_28
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20120..20689
DNA (570bp) protein (190aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens 5A RepID=H0H842_RHIRD
Uncharacterized protein {ECO:0000313|EMBL:EHJ98841.1}; TaxID=1107544 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens 5A.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6295_curated_29
unknown

Not on your lists

comp(20860..21180)
DNA (321bp) protein (107aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6295_curated_30
Labrenzia sp. C1B10, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21313..21525
DNA (213bp) protein (71aa)
Uncharacterized protein n=2 Tax=Labrenzia RepID=U7GNP9_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:ERP98286.1}; TaxID=1397530 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia sp. C1B10.;"
Displaying items 1-30 of 31 in total

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