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SCNpilot_expt_1000_bf_scaffold_6458_curated

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_6458_curated_1
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..269)
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0Q0B5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCM75789.1}; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
hypothetical protein; K07161
SCNpilot_expt_1000_bf_scaffold_6458_curated_2
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(475..747)
DNA (273bp) protein (91aa)
ATPase n=1 Tax=Rhizobium mongolense RepID=UPI0003B44FF9
Oligopeptide ABC transporter {ECO:0000313|EMBL:EKF59713.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
oligopeptide ABC transporter
SCNpilot_expt_1000_bf_scaffold_6458_curated_3
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

860..1420
DNA (561bp) protein (187aa)
Uncharacterized protein {ECO:0000313|EMBL:KDP74732.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
SCNpilot_expt_1000_bf_scaffold_6458_curated_4
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1415..1921)
DNA (507bp) protein (169aa)
4-hydroxyphenylacetate 3-monooxygenase small chain protein (EC:1.14.13.3); K13786 cob(II)yrinic acid a,c-diamide reductase [EC:1.16.8.1]
Flavoprotein oxidoreductase n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2QWJ6_9RHIZ
Flavoprotein oxidoreductase {ECO:0000313|EMBL:EKF59712.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
SCNpilot_expt_1000_bf_scaffold_6458_curated_5
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2113..3201
DNA (1089bp) protein (363aa)
ABC-type branched-chain amino acid transport system, periplasmic component n=1 Tax=Rhizobium sp. CF142 RepID=J2APE6_9RHIZ
ABC-type branched-chain amino acid transport system, periplasmic component {ECO:0000313|EMBL:EJJ25085.1}; Flags: Precursor;; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_6458_curated_6
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3257..3934
DNA (678bp) protein (226aa)
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461};; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
cbbE; Ribulose-phosphate 3-epimerase (Pentose-5-phosphate 3-epimerase) (PPE) (R5P3E) (EC:5.1.3.1)
Ribulose-phosphate 3-epimerase n=1 Tax=Rhizobium lupini HPC(L) RepID=K5D136_RHILU
SCNpilot_expt_1000_bf_scaffold_6458_curated_7
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4169..4447
DNA (279bp) protein (93aa)
membrane protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00035D314C
Uncharacterized protein {ECO:0000313|EMBL:EJC66583.1}; TaxID=755176 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae WSM1455.;"
transmembrane protein
SCNpilot_expt_1000_bf_scaffold_6458_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4524..5828
DNA (1305bp) protein (435aa)
Adenylosuccinate lyase {ECO:0000256|RuleBase:RU361172}; Short=ASL {ECO:0000256|RuleBase:RU361172};; EC=4.3.2.2 {ECO:0000256|RuleBase:RU361172};; Adenylosuccinase {ECO:0000256|RuleBase:RU361172}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
purB; Adenylosuccinate lyase (Adenylosuccinase) (ASL) (EC:4.3.2.2)
Adenylosuccinate lyase PurB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CM51_9RHIZ
SCNpilot_expt_1000_bf_scaffold_6458_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5870..6424
DNA (555bp) protein (185aa)
Putative esterase of the alpha/beta hydrolase fold containing protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CW11_9RHIZ
Putative esterase of the alpha/beta hydrolase fold containing protein {ECO:0000313|EMBL:EYR79083.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K07002
SCNpilot_expt_1000_bf_scaffold_6458_curated_10
unknown

Not on your lists

comp(6810..7583)
DNA (774bp) protein (258aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6458_curated_11
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8339..9040
DNA (702bp) protein (234aa)
diguanylate cyclase n=1 Tax=Rhizobium RepID=UPI00035D0833
GGDEF/EAL domain-containing protein {ECO:0000313|EMBL:AJC79523.1}; TaxID=1432049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. phaseoli str. IE4803.;"
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
SCNpilot_expt_1000_bf_scaffold_6458_curated_12
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9088..9402)
DNA (315bp) protein (105aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF080 RepID=J2IHF7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EUB95676.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6458_curated_13
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9783..10547
DNA (765bp) protein (255aa)
purC1; phosphoribosylaminoimidazole-succinocarboxamide synthase (EC:6.3.2.6); K01923 phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
Phosphoribosylaminoimidazole-succinocarboxamide synthase {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194445}; EC=6.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194458};; SAICAR synthetase {ECO:0000256|HAMAP-Rule:MF_00137}; TaxID=993047 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli CNPAF512.;"
Phosphoribosylaminoimidazole-succinocarboxamide synthase n=2 Tax=Rhizobium etli RepID=B3PP56_RHIE6
SCNpilot_expt_1000_bf_scaffold_6458_curated_14
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10565..10807
DNA (243bp) protein (81aa)
Phosphoribosylformylglycinamidine synthase subunit PurS {ECO:0000256|HAMAP-Rule:MF_01926}; Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_01926};; EC=6.3.5.3 {ECO:0000256|HAMAP-Rule:MF_01926};; Formylglycinamide ribonucleotide amidotransferase subunit III {ECO:0000256|HAMAP-Rule:MF_01926}; Phosphoribosylformylglycinamidine synthase subunit III {ECO:0000256|HAMAP-Rule:MF_01926}; TaxID=1432050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhi
purS; phosphoribosylformylglycinamidine synthase subunit PurS (EC:6.3.5.3); K01952 phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]
Phosphoribosylformylglycinamidine synthase, purS protein n=1 Tax=Rhizobium sp. CF080 RepID=J2HX73_9RHIZ
SCNpilot_expt_1000_bf_scaffold_6458_curated_15
Rhizobium sp. R2-400B4, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10825..11070
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4FAS9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KEQ11104.1}; TaxID=1509404 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. R2-400B4.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6458_curated_16
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11067..11738
DNA (672bp) protein (224aa)
Phosphoribosylformylglycinamidine synthase subunit PurQ {ECO:0000256|HAMAP-Rule:MF_00421, ECO:0000256|SAAS:SAAS00064601}; Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_00421};; EC=6.3.5.3 {ECO:0000256|HAMAP-Rule:MF_00421, ECO:0000256|SAAS:SAAS00064588};; Formylglycinamide ribonucleotide amidotransferase subunit I {ECO:0000256|HAMAP-Rule:MF_00421}; Glutaminase PurQ {ECO:0000256|HAMAP-Rule:MF_00421}; Phosphoribosylformylglycinamidine synthase subunit I {ECO:0000256|HAMAP-Rule:MF_00421}; TaxID=106592 species=
purQ; phosphoribosylformylglycinamidine synthase I; K01952 phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]
Phosphoribosylformylglycinamidine synthase 1 n=1 Tax=Rhizobium sp. CF122 RepID=J2J8T0_9RHIZ
SCNpilot_expt_1000_bf_scaffold_6458_curated_17
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11774..12184
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7U8U8_RHIRD
Uncharacterized protein {ECO:0000313|EMBL:EGP56744.1}; TaxID=1050720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens F2.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6458_curated_18
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12292..12573)
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7U8U7_RHIRD
Uncharacterized protein {ECO:0000313|EMBL:CDN94349.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6458_curated_19
unknown

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12668..12778
DNA (111bp) protein (37aa)

This feature has no annotations

Displaying 19 items

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