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SCNpilot_expt_1000_bf_scaffold_6032_curated

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_6032_curated_1
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..231
DNA (231bp) protein (77aa)
lipA protein n=1 Tax=Rhizobium meliloti RepID=UPI00036E6E88
lppA; Putative outer membrane protein precursor
Putative outer-membrane lipoprotein {ECO:0000313|EMBL:AEG03574.1}; Flags: Precursor;; TaxID=698936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain BL225C).;"
SCNpilot_expt_1000_bf_scaffold_6032_curated_2
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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653..1507
DNA (855bp) protein (285aa)
Putative cytochrome c-type biogenesis protein n=1 Tax=Rhizobium leguminosarum bv. viciae (strain 3841) RepID=Q1MJC9_RHIL3
cycH; cytochrome c-type biogenesis protein; K02200 cytochrome c-type biogenesis protein CcmH
Putative cytochrome c-type biogenesis protein {ECO:0000313|EMBL:CAK06931.1}; TaxID=216596 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae (strain 3841).;"
SCNpilot_expt_1000_bf_scaffold_6032_curated_3
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1504..1953
DNA (450bp) protein (150aa)
Cytochrome c-type biogenesis protein CcmE n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LIF9_RHITR
cytochrome c-type biogenesis protein CcmE
Cytochrome c-type biogenesis protein CcmE {ECO:0000256|HAMAP-Rule:MF_01959}; Cytochrome c maturation protein E {ECO:0000256|HAMAP-Rule:MF_01959}; Heme chaperone CcmE {ECO:0000256|HAMAP-Rule:MF_01959}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_6032_curated_4
unknown

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comp(1881..2132)
DNA (252bp) protein (84aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6032_curated_5
unknown

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comp(2222..2368)
DNA (147bp) protein (49aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6032_curated_6
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2486..2614)
DNA (129bp) protein (43aa)
Uncharacterized protein {ECO:0000313|EMBL:CEG08448.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
SCNpilot_expt_1000_bf_scaffold_6032_curated_7
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2896..3927
DNA (1032bp) protein (344aa)
heme lyase subunit CcmF n=1 Tax=Rhizobium sp. JGI 0001005-K05 RepID=UPI00037E4E1E
C-type cytochrome biogenesis protein CcmF {ECO:0000313|EMBL:EJJ28627.1}; Flags: Precursor;; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
cytochrome C biogenesis protein CcmF; K02198 cytochrome c-type biogenesis protein CcmF
SCNpilot_expt_1000_bf_scaffold_6032_curated_8
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3924..4379
DNA (456bp) protein (152aa)
Cytochrome-c-type biogenesis protein n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3IJK6_9RHIZ
Cytochrome-c-type biogenesis protein {ECO:0000313|EMBL:EPE99038.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
cycL; cytochrome-c-type biogenesis protein; K02200 cytochrome c-type biogenesis protein CcmH
SCNpilot_expt_1000_bf_scaffold_6032_curated_9
Rhizobium sp. H41, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4505..6043
DNA (1539bp) protein (513aa)
degP; Serine protease do-like precursor (EC:3.4.21.-)
Serine protease do-like n=1 Tax=Rhizobium sp. IRBG74 RepID=U4PVE4_9RHIZ
Serine peptidase {ECO:0000313|EMBL:KGE82105.1}; TaxID=1510041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. H41.;"
SCNpilot_expt_1000_bf_scaffold_6032_curated_10
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6127..6882
DNA (756bp) protein (252aa)
Two-component response regulator n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UX18_9RHIZ
Two-component response regulator {ECO:0000313|EMBL:ENN86215.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
putative Two-component transcriptional regulator; putative transcriptional regulator involved in heavy-metal (Cu/Zn) homeostasis
SCNpilot_expt_1000_bf_scaffold_6032_curated_11
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6879..8312
DNA (1434bp) protein (478aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
sensor histidine kinase n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI000368D10F
histidine kinase
SCNpilot_expt_1000_bf_scaffold_6032_curated_12
unknown

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comp(8422..8904)
DNA (483bp) protein (161aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6032_curated_13
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9115..11358
DNA (2244bp) protein (748aa)
Glutamate-ammonia-ligase adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00802, ECO:0000256|SAAS:SAAS00015000}; EC=2.7.7.42 {ECO:0000256|HAMAP-Rule:MF_00802, ECO:0000256|SAAS:SAAS00015004};; Glutamine-synthase adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00802}; [Glutamate--ammonia-ligase] adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00802}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF
glnE; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase (EC:2.7.7.42); K00982 glutamate-ammonia-ligase adenylyltransferase [EC:2.7.7.42]
glutamine-synthetase adenylyltransferase n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00036766F3
SCNpilot_expt_1000_bf_scaffold_6032_curated_14
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11362..13080)
DNA (1719bp) protein (573aa)
two-component sensor histidine kinase (EC:2.7.13.3); K07716 two-component system, cell cycle sensor histidine kinase PleC [EC:2.7.13.3]
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1408223 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. phaseoli CCGM1.;"
histidine kinase n=1 Tax=Rhizobium phaseoli RepID=UPI00030FB765
SCNpilot_expt_1000_bf_scaffold_6032_curated_15
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13107..13655)
DNA (549bp) protein (183aa)
pleC; two-component sensor histidine kinase; K07716 two-component system, cell cycle sensor histidine kinase PleC [EC:2.7.13.3]
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
Two-component sensor histidine kinase n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A2U7_RHIFH
SCNpilot_expt_1000_bf_scaffold_6032_curated_16
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13809..16457)
DNA (2649bp) protein (883aa)
pepN; aminopeptidase N; K01256 aminopeptidase N [EC:3.4.11.2]
Aminopeptidase N n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HLU4_9RHIZ
Aminopeptidase N {ECO:0000313|EMBL:EPE99045.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
SCNpilot_expt_1000_bf_scaffold_6032_curated_17
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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16803..17723
DNA (921bp) protein (307aa)
DMT(Drug/metabolite transporter) superfamily permease n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2297 RepID=J0W0B4_RHILT
DMT(Drug/metabolite transporter) superfamily permease {ECO:0000313|EMBL:EJC78543.1}; TaxID=754762 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2297.;"
permease
SCNpilot_expt_1000_bf_scaffold_6032_curated_18
unknown

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comp(17741..17833)
DNA (93bp) protein (31aa)

This feature has no annotations

Displaying 18 items

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