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SCNpilot_expt_1000_bf_scaffold_799_curated_21

Organism: scnpilot_dereplicated_Rhizobiales_12

near complete RP 44 / 55 MC: 2 BSCG 46 / 51 MC: 5 ASCG 10 / 38 MC: 2
Location: 19956..20351

Top 3 Functional Annotations

Value Algorithm Source
Putative permease component of ABC transporter n=1 Tax=Pseudomonas putida CSV86 RepID=L1LYP6_PSEPU similarity UNIREF
DB: UNIREF100
  • Identity: 86.9
  • Coverage: 130.0
  • Bit_score: 221
  • Evalue 4.60e-55
Putative permease component of ABC transporter {ECO:0000313|EMBL:EKX83841.1}; TaxID=1005395 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida CSV86.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 86.9
  • Coverage: 130.0
  • Bit_score: 221
  • Evalue 6.50e-55
ABC transporter permease; K02001 glycine betaine/proline transport system permease protein similarity KEGG
DB: KEGG
  • Identity: 87.0
  • Coverage: 131.0
  • Bit_score: 218
  • Evalue 1.20e-54

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Taxonomy

Pseudomonas putida → Pseudomonas → Pseudomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 396
GTGCCGGCGATCATCGCTACCATCGTCTACGGCATTCCGCCGATGCTGCGCCTGACGACGCTCGCCTTTAACCAGATCCCGCGCGATCTCGTCGAGCTTGGCAAGGCGATCGGTGCGCCGCCGCGCGCCATCCTGTTCAAGATCGAGATACCGTCGGCCATGCCGACGCTTCTGGTTGGGCTGAACCAGTGCATCCTCCTGTCGCTGGCCATGGTCGTCCTCGCCGGCCTCGTCGGCGCCGGCGGGCTGGGAGCCGAGGTGACGCGCGGCCTGACGCGCATGGAAATGGGGCTGGGCCTGCGCGCCGGCCTCGCCATCGTCGCCGTCGCCATCCTGCTCGACCGGCTGTCGCGCGGCGCGCTCCACCGGCCGCGCGCGACAGCCAAATCCTCCTGA
PROTEIN sequence
Length: 132
VPAIIATIVYGIPPMLRLTTLAFNQIPRDLVELGKAIGAPPRAILFKIEIPSAMPTLLVGLNQCILLSLAMVVLAGLVGAGGLGAEVTRGLTRMEMGLGLRAGLAIVAVAILLDRLSRGALHRPRATAKSS*