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SCNpilot_expt_1000_bf_scaffold_4460_curated_2

Organism: scnpilot_dereplicated_Rhizobiales_12

near complete RP 44 / 55 MC: 2 BSCG 46 / 51 MC: 5 ASCG 10 / 38 MC: 2
Location: 1623..2744

Top 3 Functional Annotations

Value Algorithm Source
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 80.5
  • Coverage: 374.0
  • Bit_score: 592
  • Evalue 5.20e-166
DNA polymerase IV (EC:2.7.7.7); K02346 DNA polymerase IV [EC:2.7.7.7] similarity KEGG
DB: KEGG
  • Identity: 72.8
  • Coverage: 353.0
  • Bit_score: 499
  • Evalue 1.00e-138
  • rbh
DNA polymerase IV n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CQP0_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 80.5
  • Coverage: 374.0
  • Bit_score: 592
  • Evalue 3.70e-166

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1122
ATGCAGCCCGTCACATCGGCCGAGATAGAGGAGCAGAATGCGGAGCACGAGGAGCGCGTCCGGCGCATCATCCATGTCGACATGGATGCATTTTACGCCTCCGTCGAACAACGGGATAATCCCGAACTGCGGGGTAAACCCGTTGCTGTCGGCGGTTCGGCCGCCCGTGGCGTCGTGGCGGCTGCAAGCTATGAGGCCCGCGCCTTTGGTGTGCGATCCGCCCTCCCCTCGATCACCGCCAAGCGGCGCTGTCCTGATCTGATCTTCGTTCCGCCGCGCTTCGACGTCTATCGAGCTGTTTCATCGCAGATCCATGCGATCTTCGCCGAGCATACCGATCTGATCGAACCCTTGTCGCTCGACGAAGCCTACCTCGATGTCACCGACAATAAGCAGGGCATTCCGGTCGCGACCGAGATCGCCACCAGGATCCGCGCCCGCATCAAGGAAGTCACCGGCCTCAACGCCTCCGCCGGGATTTCCTATTGCAAGTTTCTGGCAAAAATGGCCTCGGATCTCAACAAGCCCAATGGCCAGGCCGTTATCACGCCCAAGCACGGTCCCGCCTTTGTCGAGGCGCTGGCCGTTAAGAAGTTTCACGGCGTCGGGCCGGCGACTGCGGCCAAAATGGAGCGGCTCGGCATCCTGACGGGCGCAGACCTCAAAGCGAAATCCCTGACCTACCTGCAGCAGCATTTCGGCAAGTCGGGCGCCTGGTATTACAATGTCGCCCGCGGTATCGATCATCGGTTGGTCCAGCCGGATCGGCCACGCAAGTCAGTGGGTGTCGAAGATACGTTTACGGTCGATATCTTCGACCGGGAGGCCGCCCGCGCGGAAATCACGCCGCTCGCTGCGGAGGTCTGGCGCCGTAGCGAAGACAAGGGCCTCCATGGCCGCACGGTGACGCTGAAGGTGACATATGCCGATTTCCAGAAAATCACCCGCAGCCGAACATCGATCGCGCCGTTTGCGACGGCAGATGAACTCGAAGCCGCGGCTCGCGCGCTTCTCGACCCGTTGTTCCCGTCTGTGAAAGGGATTCGTCTGCTCGGGGTGACACTCTCGTCCTTTGTCGACGACGAGGAGAACGATACGGATCAGCTTACGCTTCAGATTTAG
PROTEIN sequence
Length: 374
MQPVTSAEIEEQNAEHEERVRRIIHVDMDAFYASVEQRDNPELRGKPVAVGGSAARGVVAAASYEARAFGVRSALPSITAKRRCPDLIFVPPRFDVYRAVSSQIHAIFAEHTDLIEPLSLDEAYLDVTDNKQGIPVATEIATRIRARIKEVTGLNASAGISYCKFLAKMASDLNKPNGQAVITPKHGPAFVEALAVKKFHGVGPATAAKMERLGILTGADLKAKSLTYLQQHFGKSGAWYYNVARGIDHRLVQPDRPRKSVGVEDTFTVDIFDREAARAEITPLAAEVWRRSEDKGLHGRTVTLKVTYADFQKITRSRTSIAPFATADELEAAARALLDPLFPSVKGIRLLGVTLSSFVDDEENDTDQLTLQI*