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SCNpilot_expt_1000_bf_scaffold_4460_curated

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4460_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..1619
DNA (1617bp) protein (539aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
UvrD/REP helicase; K03657 DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]
ATP-dependent DNA helicase n=1 Tax=Sinorhizobium medicae RepID=UPI00037BDEF4
SCNpilot_expt_1000_bf_scaffold_4460_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1623..2744
DNA (1122bp) protein (374aa)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
DNA polymerase IV (EC:2.7.7.7); K02346 DNA polymerase IV [EC:2.7.7.7] rbh
DNA polymerase IV n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CQP0_9RHIZ
SCNpilot_expt_1000_bf_scaffold_4460_curated_3
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2849..3439
DNA (591bp) protein (197aa)
Uncharacterized protein n=2 Tax=Rhizobium fredii RepID=G9ADE7_RHIFH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CEO91219.1}; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
SCNpilot_expt_1000_bf_scaffold_4460_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3439..3696
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Ochrobactrum intermedium M86 RepID=M5JV57_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR81020.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4460_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3813..4064)
DNA (252bp) protein (84aa)
Uncharacterized protein n=1 Tax=Sinorhizobium meliloti (strain AK83) RepID=F6EBB1_SINMK
Uncharacterized protein {ECO:0000313|EMBL:EYR81019.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4460_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4245..5027
DNA (783bp) protein (261aa)
Exodeoxyribonuclease III {ECO:0000313|EMBL:EYR81018.1}; EC=3.1.11.2 {ECO:0000313|EMBL:EYR81018.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
exodeoxyribonuclease III Xth; K01142 exodeoxyribonuclease III [EC:3.1.11.2]
Exodeoxyribonuclease III n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CUX1_9RHIZ
SCNpilot_expt_1000_bf_scaffold_4460_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5030..5911)
DNA (882bp) protein (294aa)
hypothetical protein n=1 Tax=Rhizobium sp. JGI 0001005-K05 RepID=UPI00036F90F6
Uncharacterized protein {ECO:0000313|EMBL:EYR81017.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4460_curated_8
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6111..6719
DNA (609bp) protein (203aa)
Probable DNA repair protein PMI07_02034 n=1 Tax=Rhizobium sp. CF080 RepID=J2STK2_9RHIZ
Non-homologous end joining protein Ku {ECO:0000256|HAMAP-Rule:MF_01875}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4460_curated_9
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6739..6972
DNA (234bp) protein (78aa)
DNA helicase n=1 Tax=Rhizobium gallicum RepID=UPI00036805DC
Non-homologous end joining protein Ku {ECO:0000256|HAMAP-Rule:MF_01875}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
Ku protein; K10979 DNA end-binding protein Ku
SCNpilot_expt_1000_bf_scaffold_4460_curated_10
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6984..7793
DNA (810bp) protein (270aa)
DNA repair protein n=1 Tax=Rhizobium leguminosarum RepID=UPI0003806F62
Non-homologous end joining protein Ku {ECO:0000256|HAMAP-Rule:MF_01875}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
Ku protein; K10979 DNA end-binding protein Ku
SCNpilot_expt_1000_bf_scaffold_4460_curated_11
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7849..8907
DNA (1059bp) protein (353aa)
ATP-dependent DNA ligase n=1 Tax=Agrobacterium tumefaciens (strain C58 / ATCC 33970) RepID=A9CLR5_AGRT5
ATP-dependent DNA ligase {ECO:0000313|EMBL:KDP72615.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
ATP-dependent DNA ligase rbh
SCNpilot_expt_1000_bf_scaffold_4460_curated_12
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8835..9314)
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=Sinorhizobium meliloti (strain SM11) RepID=F7XCJ8_SINMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEH81408.1}; TaxID=707241 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain SM11).;"
SCNpilot_expt_1000_bf_scaffold_4460_curated_13
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9311..10213)
DNA (903bp) protein (301aa)
DNA ligase D (EC:6.5.1.1)
ATP-dependent DNA ligase n=1 Tax=Sinorhizobium meliloti CCNWSX0020 RepID=H0FVT6_RHIML
ATP-dependent DNA ligase {ECO:0000313|EMBL:KDP72613.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
Displaying 13 items

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