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SCNpilot_expt_1000_bf_scaffold_1531_curated_15

Organism: scnpilot_dereplicated_Rhizobiales_12

near complete RP 44 / 55 MC: 2 BSCG 46 / 51 MC: 5 ASCG 10 / 38 MC: 2
Location: comp(16496..17761)

Top 3 Functional Annotations

Value Algorithm Source
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 98.1
  • Coverage: 421.0
  • Bit_score: 809
  • Evalue 2.30e-231
Transcription termination factor Rho n=1 Tax=Rhizobium sp. CF142 RepID=J2LBG6_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 98.1
  • Coverage: 421.0
  • Bit_score: 809
  • Evalue 2.20e-231
rho; transcription termination factor Rho; K03628 transcription termination factor Rho similarity KEGG
DB: KEGG
  • Identity: 97.9
  • Coverage: 421.0
  • Bit_score: 808
  • Evalue 8.90e-232

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1266
ATGGCTGAAATGAAGCTTCAGGAACTCAAGAACAAGACTCCCACCGATCTCCTGGCCTTCGCCGAATCACTGGAAGTCGAAAACGCCAGCACCATGCGCAAGCAGGAGCTGATGTTTGCGATCCTGAAGGTTCTTGCCAACCAGGACGTGGAAATCATCGGCGAAGGCGTGGTCGAAGTGCTGCAGGACGGTTTCGGTTTCCTGCGTTCCGCCAATGCCAATTATCTGCCCGGCCCCGATGATATCTACACTTCTCCCTCGCAGATCCGCCGCTTCTCCCTGAAGACCGGCGATACCGTTGAAGGCCCGATTCGCGGACCCAAAGAAGGCGAGCGCTATTTCGCCCTGCTCAAGGTCAACACGATCAATTTCGACGACCCGGAAAAAATCCGCCACAAGGTGCATTTCGACAATCTGACGCCGCTCTATCCGAACGAGCGCTTCAAGATGGAACTCGACGTTCCCACCTCGAAGGATTTGTCGCCGCGCGTCATCGATCTCGTGGCGCCGCTTGGAAAGGGTCAGCGCGCCCTGATCGTCGCGCCGCCGCGCACCGGTAAGACGGTGCTGTTGCAGAACATCGCCCATTCGATCACCGCAAACCATCCGGAATGCTACCTGATCGTCCTGCTGATCGACGAACGCCCGGAAGAAGTCACCGACATGCAGCGCTCGGTGCGCGGCGAAGTCGTATCCTCCACTTTCGACGAGCCGGCCGTGCGCCACGTTCAGGTCGCCGAAATGGTCATCGAAAAGGCCAAGCGTCTGGTCGAGCATGGTCGTGACGTCGTCATCCTGCTCGATTCGATTACCCGCCTCGGGCGCGCCTACAACACCGTCGTGCCGTCTTCCGGCAAGGTTCTGACCGGCGGTGTTGATGCCAACGCCCTGCAGCGCCCGAAGCGCTTCTTCGGCGCGGCGCGTAACATCGAGGAAGGCGGCTCGCTGACGATCATCGCCACCGCCCTGATCGATACCGGCAGCCGTATGGACGAAGTCATCTTCGAAGAATTCAAGGGCACCGGCAATTCGGAAATCGTCCTCGACCGCAAGGTCGCCGACAAGCGCATCTTCCCGGCGATGGACATTCTCAAATCCGGTACGCGTAAGGAAGACCTGCTCGTGCCGCGCCAGGATCTGCAGAAGATTTTCGTACTGCGCCGTATCCTGGCGCCGATGGGCACCACCGACGCAATCGAATTCCTCATCGACAAGCTCAAACAGACGAAGAACAATGGCGATTTCTTCGACTCGATGAACACATAA
PROTEIN sequence
Length: 422
MAEMKLQELKNKTPTDLLAFAESLEVENASTMRKQELMFAILKVLANQDVEIIGEGVVEVLQDGFGFLRSANANYLPGPDDIYTSPSQIRRFSLKTGDTVEGPIRGPKEGERYFALLKVNTINFDDPEKIRHKVHFDNLTPLYPNERFKMELDVPTSKDLSPRVIDLVAPLGKGQRALIVAPPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVRGEVVSSTFDEPAVRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRIFPAMDILKSGTRKEDLLVPRQDLQKIFVLRRILAPMGTTDAIEFLIDKLKQTKNNGDFFDSMNT*