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SCNpilot_expt_1000_bf_scaffold_2026_curated_15

Organism: scnpilot_dereplicated_Rhizobiales_12

near complete RP 44 / 55 MC: 2 BSCG 46 / 51 MC: 5 ASCG 10 / 38 MC: 2
Location: 13834..14541

Top 3 Functional Annotations

Value Algorithm Source
Nopaline transport system permease protein NocQ n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CA24_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 92.3
  • Coverage: 233.0
  • Bit_score: 429
  • Evalue 2.00e-117
Amine acid ABC transporter, permease protein His/Glu/Gln/Arg/opine family {ECO:0000313|EMBL:EYR79371.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 92.3
  • Coverage: 233.0
  • Bit_score: 429
  • Evalue 2.80e-117
polar amino acid ABC transporter inner membrane subunit; K10020 octopine/nopaline transport system permease protein similarity KEGG
DB: KEGG
  • Identity: 82.6
  • Coverage: 235.0
  • Bit_score: 388
  • Evalue 1.60e-105

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 708
ATGGAATTTGGATTATGGCAGGTATGGGAGGGCGGCTGGATTGCCGCCATCCTGCGCGGCGCGGCGATCACCGTCGCGCTCGGGCTGGCGAGCATGGCCTTCGGCATCGTCATCGGCACCGCCTGCGGGTTGATAAAATGGGCGCGGATTTTTCCGCTGACGCTGGTCGTCGATTTTTACACGTCCATCGTGCGCGGCGTGCCGGAACTGCTCATCATCTATCTGCTGTTCTTCTCCTCGGTGGAGTTCGTGGCCCGTGTCGCGACCGCCTTCGGTTACGCGGGGCTGGCCGGCAACGGCTATGCCTTCGTCATCGCCGTCGTCGCCATCGCCGCGATTTCCGGGGCCTATTCGACCGAGGTGGTGCGCGGCGCGCTGGCGGCCATTCCCGCCGGCCATATCGAGGCGGCGCGGGCGCTCGGCATTCCCGGCAGGCGCATCTTTCGCCGCATCATCGCGCCGCAGATGCTGCGGATTGCCGTGCCCGGCATGAACAATGTCTGGCAGACCACGATCAAGGACACCGCCCTCGTCTCCGTGGTCGGGTTGCAGGAGCTGATGCGCGCCGCCTTCGTCGGCGCCGGCTCGACCCGGCATCCCTTCATCTTCTATTTCATCGCCGCGGTCGTCTATCTCGCGATCACGCTGGTCAGCCAGGGAGGCTTCGACCGGGTCGAGCGCCTGCTGCGGCTTCGTTCGGGGAAATAA
PROTEIN sequence
Length: 236
MEFGLWQVWEGGWIAAILRGAAITVALGLASMAFGIVIGTACGLIKWARIFPLTLVVDFYTSIVRGVPELLIIYLLFFSSVEFVARVATAFGYAGLAGNGYAFVIAVVAIAAISGAYSTEVVRGALAAIPAGHIEAARALGIPGRRIFRRIIAPQMLRIAVPGMNNVWQTTIKDTALVSVVGLQELMRAAFVGAGSTRHPFIFYFIAAVVYLAITLVSQGGFDRVERLLRLRSGK*