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SCNpilot_expt_1000_bf_scaffold_2026_curated

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2026_curated_1
RHI_Rhodobacterales_62_75, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..257)
DNA (255bp) protein (85aa)
FAD dependent oxidoreductase; K00111 glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
FAD dependent oxidoreductase n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8XE60_NAKMY
Tax=RIFCSPHIGHO2_12_FULL_Rhodobacterales_62_75_curated
SCNpilot_expt_1000_bf_scaffold_2026_curated_2
RHI_Rhodobacterales_62_75, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(396..638)
DNA (243bp) protein (81aa)
biotin attachment protein n=1 Tax=actinobacterium SCGC AAA278-O22 RepID=UPI0003798664
biotin/lipoyl attachment domain-containing protein
Tax=RIFCSPHIGHO2_12_FULL_Rhodobacterales_62_75_curated
SCNpilot_expt_1000_bf_scaffold_2026_curated_3
RHI_Rhodobacterales_62_75, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(635..1666)
DNA (1032bp) protein (344aa)
transketolase; K00162 pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
pyruvate dehydrogenase subunit beta n=1 Tax=Glaciibacter superstes RepID=UPI0003B4D279
Tax=RIFCSPHIGHO2_12_FULL_Rhodobacterales_62_75_curated
SCNpilot_expt_1000_bf_scaffold_2026_curated_4
RHI_Rhodobacterales_62_75, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1663..2667)
DNA (1005bp) protein (335aa)
pyruvate dehydrogenase (EC:1.2.4.1); K00161 pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha n=1 Tax=Glaciibacter superstes RepID=UPI0003B3E37F
Tax=RIFCSPHIGHO2_12_FULL_Rhodobacterales_62_75_curated
SCNpilot_expt_1000_bf_scaffold_2026_curated_5
RHI_Rhodobacterales_62_75, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2932..3891
DNA (960bp) protein (320aa)
Uncharacterized protein n=1 Tax=Corynebacterium pyruviciproducens ATCC BAA-1742 RepID=S2Z0B5_9CORY
Transcriptional regulator, DeoR family
Tax=RIFCSPHIGHO2_12_FULL_Rhodobacterales_62_75_curated
SCNpilot_expt_1000_bf_scaffold_2026_curated_6
RHI_Rhodobacterales_62_75, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4016..5473
DNA (1458bp) protein (486aa)
xylulokinase; K00854 xylulokinase [EC:2.7.1.17]
Xylulokinase n=1 Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2AYV4_STRRD
Tax=RIFCSPHIGHO2_12_FULL_Rhodobacterales_62_75_curated
SCNpilot_expt_1000_bf_scaffold_2026_curated_7
Wenxinia marina, Wenxinia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5499..6458
DNA (960bp) protein (320aa)
Lipoyl synthase {ECO:0000256|HAMAP-Rule:MF_00206}; EC=2.8.1.8 {ECO:0000256|HAMAP-Rule:MF_00206};; Lip-syn {ECO:0000256|HAMAP-Rule:MF_00206}; Lipoate synthase {ECO:0000256|HAMAP-Rule:MF_00206}; Lipoic acid synthase {ECO:0000256|HAMAP-Rule:MF_00206}; Sulfur insertion protein LipA {ECO:0000256|HAMAP-Rule:MF_00206}; TaxID=1123501 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Wenxinia.;" source="Wenxinia marina DSM 24838.;"
lipA; lipoyl synthase; K03644 lipoic acid synthetase [EC:2.8.1.8]
radical SAM protein n=1 Tax=Wenxinia marina RepID=UPI00037E46FC
SCNpilot_expt_1000_bf_scaffold_2026_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6503..7432)
DNA (930bp) protein (310aa)
Glycine cleavage system transcriptional activator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWW8_9RHIZ
Glycine cleavage system transcriptional activator {ECO:0000313|EMBL:EYR79377.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
transcriptional regulator, LysR family
SCNpilot_expt_1000_bf_scaffold_2026_curated_9
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7551..8597
DNA (1047bp) protein (349aa)
vanillate O-demethylase oxygenase (EC:1.14.13.82)
Toluene-4-sulfonate monooxygenase system iron-sulfur subunit TsaM1 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D5S8_9RHIZ
Vanillate O-demethylase oxygenase subunit {ECO:0000313|EMBL:CDN96421.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
SCNpilot_expt_1000_bf_scaffold_2026_curated_10
Rhizobium sp. H41, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8610..9698
DNA (1089bp) protein (363aa)
phthalate 4,5-dioxygenase (EC:1.14.12.7)
Phthalate 4,5-dioxygenase n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5YCA7_PARAH
Oxidoreductase {ECO:0000313|EMBL:KGE79913.1}; TaxID=1510041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. H41.;"
SCNpilot_expt_1000_bf_scaffold_2026_curated_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9731..10840
DNA (1110bp) protein (370aa)
Histidinol-phosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01023}; EC=2.6.1.9 {ECO:0000256|HAMAP-Rule:MF_01023};; Imidazole acetol-phosphate transaminase {ECO:0000256|HAMAP-Rule:MF_01023}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hisC; histidinol-phosphate aminotransferase (EC:2.6.1.9); K00817 histidinol-phosphate aminotransferase [EC:2.6.1.9]
Histidinol-phosphate aminotransferase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EER4_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2026_curated_12
unknown

Not on your lists

10986..11741
DNA (756bp) protein (252aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2026_curated_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12159..12905
DNA (747bp) protein (249aa)
nocP2; nopaline ABC transporter nucleotide-binding protein/ATPase (EC:3.6.3.21)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00036B419A
ABC-type histidine transport system ATPase component {ECO:0000313|EMBL:EYR79373.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_2026_curated_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12959..13756
DNA (798bp) protein (266aa)
Nopaline-binding periplasmic protein NocT n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ERX3_9RHIZ
Nopaline-binding periplasmic protein NocT {ECO:0000313|EMBL:EYR79372.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
nocT; nopaline ABC transporter substrate-binding protein; K10018 octopine/nopaline transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_2026_curated_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13834..14541
DNA (708bp) protein (236aa)
Nopaline transport system permease protein NocQ n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CA24_9RHIZ
Amine acid ABC transporter, permease protein His/Glu/Gln/Arg/opine family {ECO:0000313|EMBL:EYR79371.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
polar amino acid ABC transporter inner membrane subunit; K10020 octopine/nopaline transport system permease protein
SCNpilot_expt_1000_bf_scaffold_2026_curated_16
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14545..15255
DNA (711bp) protein (237aa)
Nopaline transport system permease protein NocM n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CPW3_9RHIZ
Amine acid ABC transporter, permease protein His/Glu/Gln/Arg/opine family {ECO:0000313|EMBL:EYR79370.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
polar amino acid ABC transporter inner membrane subunit; K10019 octopine/nopaline transport system permease protein
SCNpilot_expt_1000_bf_scaffold_2026_curated_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15375..16781
DNA (1407bp) protein (469aa)
Glycolate oxidase subunit GlcD n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ERW7_9RHIZ
Glycolate oxidase subunit GlcD {ECO:0000313|EMBL:EYR79367.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
FAD linked oxidase-like protein
SCNpilot_expt_1000_bf_scaffold_2026_curated_18
unknown

Not on your lists

16732..16893
DNA (162bp) protein (54aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2026_curated_19
unknown

Not on your lists

comp(16908..17081)
DNA (174bp) protein (58aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2026_curated_20
Acetobacter tropicalis, Acetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17289..17759
DNA (471bp) protein (157aa)
Transcriptional regulator MarR n=1 Tax=Acetobacter tropicalis NBRC 101654 RepID=F7VAE5_9PROT
Transcriptional regulator, MarR family {ECO:0000313|EMBL:KGB23098.1}; TaxID=104102 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acetobacter.;" source="Acetobacter tropicalis.;"
marR; transcriptional regulator MarR
SCNpilot_expt_1000_bf_scaffold_2026_curated_21
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17799..18974)
DNA (1176bp) protein (392aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. ORS 375 RepID=H0SPG2_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:KGF69790.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
peptidase M24
SCNpilot_expt_1000_bf_scaffold_2026_curated_22
Celeribacter indicus, Celeribacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18971..19981)
DNA (1011bp) protein (337aa)
D-3-phosphoglycerate dehydrogenase (EC:1.1.1.95)
hypothetical protein n=1 Tax=Sinorhizobium medicae RepID=UPI00035D2F5E
D-3-phosphoglycerate dehydrogenase,NAD-binding protein {ECO:0000313|EMBL:AJE47082.1}; TaxID=1208324 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Celeribacter.;" source="Celeribacter indicus.;"
SCNpilot_expt_1000_bf_scaffold_2026_curated_23
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20049..20372)
DNA (324bp) protein (108aa)
Lcz33 n=1 Tax=Streptomyces sanglieri RepID=B0LJ50_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:KGF69789.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
antibiotic biosynthesis monooxygenase family protein
SCNpilot_expt_1000_bf_scaffold_2026_curated_24
Saccharopolyspora erythraea, Saccharopolyspora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20448..22139)
DNA (1692bp) protein (564aa)
Peptide ABC transporter, ATP-binding protein n=2 Tax=Saccharopolyspora erythraea RepID=A4FJ61_SACEN
peptide ABC transporter, ATP-binding protein; K02031 peptide/nickel transport system ATP-binding protein; K02032 peptide/nickel transport system ATP-binding protein
Peptide ABC transporter ATPase {ECO:0000313|EMBL:EQD83551.1}; TaxID=1382595 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharopolyspora.;" source="Saccharopolyspora erythraea D.;"
SCNpilot_expt_1000_bf_scaffold_2026_curated_25
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(22136..23047)
DNA (912bp) protein (304aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F4G0_CONWI
binding-protein-dependent transporters inner membrane component; K02034 peptide/nickel transport system permease protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ADB50532.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
SCNpilot_expt_1000_bf_scaffold_2026_curated_26
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23044..23994)
DNA (951bp) protein (317aa)
Oligopeptide/dipeptide ABC transporter, permease protein n=1 Tax=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) RepID=Q5LSW8_RUEPO
Uncharacterized protein {ECO:0000313|EMBL:KGF69788.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
oligopeptide/dipeptide ABC transporter permease; K02033 peptide/nickel transport system permease protein
SCNpilot_expt_1000_bf_scaffold_2026_curated_27
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24085..25668)
DNA (1584bp) protein (528aa)
ABC-type dipeptide transport system, periplasmic component n=1 Tax=Saccharomonospora viridis (strain ATCC 15386 / DSM 43017 / JCM 3036 / NBRC 12207 / P101) RepID=C7MT21_SACVD
Uncharacterized protein {ECO:0000313|EMBL:KGF69787.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
family 5 extracellular solute-binding protein; K02035 peptide/nickel transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_2026_curated_28
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26022..26351)
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Klebsiella pneumoniae UCICRE 7 RepID=V3EIK8_KLEPN
Diacetyl reductase {ECO:0000313|EMBL:EXL06832.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
2,3-butanediol dehydrogenase, S-alcohol forming, (S)-acetoin-specific
SCNpilot_expt_1000_bf_scaffold_2026_curated_29
Ketogulonicigenium vulgare, Ketogulonicigenium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26834..27886)
DNA (1053bp) protein (351aa)
Integral membrane protein n=2 Tax=Ketogulonicigenium vulgare RepID=F9Y8R5_KETVW
hypothetical protein
Integral membrane protein {ECO:0000313|EMBL:AEM41234.1}; TaxID=759362 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ketogulonicigenium.;" source="Ketogulonicigenium vulgare (strain WSH-001).;"
SCNpilot_expt_1000_bf_scaffold_2026_curated_30
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27890..28579)
DNA (690bp) protein (230aa)
Putative Murein hydrolase export regulator, LrgB family protein n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5ESE6_BRASB
murein hydrolase export regulator, LrgB family protein
Putative Murein hydrolase export regulator, LrgB family protein {ECO:0000313|EMBL:ABQ39090.1}; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
Displaying items 1-30 of 33 in total

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