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SCNpilot_expt_1000_bf_scaffold_4046_curated_1

Organism: scnpilot_dereplicated_Rhizobiales_12

near complete RP 44 / 55 MC: 2 BSCG 46 / 51 MC: 5 ASCG 10 / 38 MC: 2
Location: 1..246

Top 3 Functional Annotations

Value Algorithm Source
Polar amino acid ABC transporter, inner membrane subunit n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F390_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 61.3
  • Coverage: 80.0
  • Bit_score: 89
  • Evalue 2.20e-15
Amino acid ABC transporter membrane protein 2, PAAT family {ECO:0000313|EMBL:EYR82832.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 61.6
  • Coverage: 86.0
  • Bit_score: 96
  • Evalue 2.60e-17
nocM; opine ABC transporter permease; K10019 octopine/nopaline transport system permease protein similarity KEGG
DB: KEGG
  • Identity: 43.3
  • Coverage: 67.0
  • Bit_score: 65
  • Evalue 8.30e-09

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 246
ACGATCACCCTCATGGAACTGACAGGCACTGCCCGCAAGATCGTCGCTCAGACCTTCTCGCCATACGAGGTCTTCATTTCCGCAGCGTTGATCTATCTCGGCATCACCTTTGTGGTCGTTCACGTAGTTGAACGCGTGGAGCGGCATGTCACAAGACACCTGCGGCGCGTTGAGTTTCAGAACGACTACGACGAGCAAGCGCGCGATATGACGCAGATCCCGGCGCTTGAGCAGGTGGCACGATGA
PROTEIN sequence
Length: 82
TITLMELTGTARKIVAQTFSPYEVFISAALIYLGITFVVVHVVERVERHVTRHLRRVEFQNDYDEQARDMTQIPALEQVAR*