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SCNpilot_expt_1000_bf_scaffold_4046_curated

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4046_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..246
DNA (246bp) protein (82aa)
Polar amino acid ABC transporter, inner membrane subunit n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F390_9RHIZ
Amino acid ABC transporter membrane protein 2, PAAT family {ECO:0000313|EMBL:EYR82832.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
nocM; opine ABC transporter permease; K10019 octopine/nopaline transport system permease protein
SCNpilot_expt_1000_bf_scaffold_4046_curated_2
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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243..1394
DNA (1152bp) protein (384aa)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201};; Flags: Precursor;; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
Alanine racemase n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F391_9RHIZ
alanine racemase
SCNpilot_expt_1000_bf_scaffold_4046_curated_3
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1417..2256
DNA (840bp) protein (280aa)
ABC-type transporter, periplasmic subunit family 3 n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F392_9RHIZ
ABC-type transporter, periplasmic subunit family 3 {ECO:0000313|EMBL:EHS52802.1}; Flags: Precursor;; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
nocT; nopaline binding protein of ABC transporter; K10018 octopine/nopaline transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_4046_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2382..4499)
DNA (2118bp) protein (706aa)
Conjugal transfer protein TraG n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CL71_9RHIZ
Conjugal transfer protein TraG {ECO:0000313|EMBL:EYR82759.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Type IV secretory pathway, VirD4 component
SCNpilot_expt_1000_bf_scaffold_4046_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4496..5494)
DNA (999bp) protein (333aa)
Type IV secretion system protein VirB11 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C5I5_9RHIZ
Type IV secretion system protein VirB11 {ECO:0000313|EMBL:EYR82760.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
type II secretion system protein E; K03196 type IV secretion system protein VirB11
SCNpilot_expt_1000_bf_scaffold_4046_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5491..6912)
DNA (1422bp) protein (474aa)
Type IV secretion system protein VirB10 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EN42_9RHIZ
Type IV secretion system protein VirB10 {ECO:0000313|EMBL:EYR82761.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
conjugal transfer protein; K03195 type IV secretion system protein VirB10 rbh
SCNpilot_expt_1000_bf_scaffold_4046_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6909..7691)
DNA (783bp) protein (261aa)
P-type conjugative transfer protein VirB9 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CQP5_9RHIZ
P-type conjugative transfer protein VirB9 {ECO:0000313|EMBL:EYR82762.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
conjugal transfer protein TrbG/VirB9/CagX; K03204 type IV secretion system protein VirB9
SCNpilot_expt_1000_bf_scaffold_4046_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7691..8425)
DNA (735bp) protein (245aa)
VirB8 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CVE8_9RHIZ
VirB8 {ECO:0000313|EMBL:EYR82763.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
virB8; type IV secretion protein VirB8; K03203 type IV secretion system protein VirB8
SCNpilot_expt_1000_bf_scaffold_4046_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8578..8841)
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CL76_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR82764.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Displaying 9 items

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