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SCNpilot_expt_1000_bf_scaffold_4046_curated_4

Organism: scnpilot_dereplicated_Rhizobiales_12

near complete RP 44 / 55 MC: 2 BSCG 46 / 51 MC: 5 ASCG 10 / 38 MC: 2
Location: comp(2382..4499)

Top 3 Functional Annotations

Value Algorithm Source
Conjugal transfer protein TraG n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CL71_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 82.0
  • Coverage: 707.0
  • Bit_score: 1143
  • Evalue 0.0
Conjugal transfer protein TraG {ECO:0000313|EMBL:EYR82759.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 82.0
  • Coverage: 707.0
  • Bit_score: 1143
  • Evalue 0.0
Type IV secretory pathway, VirD4 component similarity KEGG
DB: KEGG
  • Identity: 29.0
  • Coverage: 586.0
  • Bit_score: 225
  • Evalue 4.10e-56

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 2118
ATGAACCCGGCCATCCTTCTGTTCGGGCTGGTCATCGCCGCGGCCATCGCGGCGTTCGTCGGCTCGCTCGCCTATGCCGGCCTCTATTACGCTTTCGACAATTCGACCTGGATGCTCCAGGCGCTCCAGGACGACATTCTGGCGTCCTACAAGGCGGCACGCCTCGATCTTGCCGCCGGCGATTGGCATCGGCCGGCGATAGCGGCCGCGGCTGGACTGTTCGCTGGCGGCGCCATGCTGGTCGCCGCTATAACGGGCAAGAAGAAATCGACCGACGCCCGATTTCTCGGCCCGCTGGAAGCCCGCGCGCTCGGCCTGACGCGCACCGGCGGCGTTTTCGTCGGGCGGATCGGCGGCCGCCTGATCAAGGTTCCGGGCGGCTTCACCCAGCGCGGCTCCGGCCGGCGACGGTTCCTGAAACCCATGCTGTTCGGCGGAAAGAAACTCTGGATCGATGGCGACGATGTCGGAGGCTTCGTCATTGGCCCGCCCCGTTCGGGCAAGGGCGCTTCGCTGATCGTGCCGAATTGCCTGCTCTGGCCCGACAGCATTGTCGTGCTCGACATGCGTGGTGAAACATATGAGGCGACCGCCGGCTATCGCTCGAAATTCTCGCGCGTCCTGCGGTTCTCGCCGGTCGACGAAAACGGCGACACCGAATGCTATAACGCGCTTGATTTTGTCGCCATTGATCCCGATCAGCGCGATATCGACATCAACTCGATCGCGACGGCGCTGCTGCCGACGCCCAAGGGCGATGCCTACTGGATCTCCGATGCCCGCGCGCTGTTCGCCGGCGTCACCTCCTGGGTATTAGAAAACCCCGATATTCTCGACAAGGACAAAAATCTCGGCACGGTCCTCAATGTCGTCGAGGGTGGCGATCAGCCACTCCGCGCGTGGCTGGAGGAGGTCGCCAATCCGGAGCTTCGCGACGCCTGGATCAGCTCCTTCACATATACCACCCTCGCCCGCTTCGCCGTCATGGCCAGCAAGCAGTTCGATGGCGTCTATGGTTCGCTTGCCGCGGCGGTCCGGCCGTTCAAGAACAACCGCATCCTGCGCGCGACGGCGCGGTCGACCTTCGACATTCGGGCGATGCGCCGCGAGAACATGAGCCTCTATCTGGATTTCCGAATCCAGCAAATCGCCTCGATCGGGCCGATCTTCAACGTGCTGATGGTCCAGTTCATGGATTACATGTCACGCAACATGATGAAGCGCGGCGAGCGGCGTGTCCTCGTCCTGCTCGATGAATTCCAGAACCTGGGCAAGCTGGAAAACGCCTTGACCGTCGCCACCGTCCTCGGCGGCTACGGCATACCTTGCTGGTTCTTCGTCCAGTCGCTGCGGTCGATCGACAACGTTTACACCCGCGAAGGCCGGCAGACCCTCGTCAACTCCGCCCGCGCCCAGATTTTCCTTGGTGCGCAGGACCCGGAAGATCAGCGCTACGTGTCGCAGTTGCTCGGCGAGCGGAAGGAGGTGACGGTCGACAAGGCGGTCTCCACCGGCGTGACGCTATTCGATCGAAAAGGGGCTACCATATCCCACAAGACCACGATGCGGCCGCTGATGCGGCCGGATGAGCTGGGCGCCATGAACGAGACCCGATGCATCATCAAGCTGCGCAATCAGCAGCCGATCCTTGGGGTCCGAAATTTCTACTACGCTGACTCGGCATTGTTGAAGCGCGCTTGGTTGCGAGTCCACTCACCTCAAACGCGGCTTGTCTCCGCGGACGCAACCGGTTTCACAACTGTGACGTCCGACGACAATCTACCCTGCGGTAATCCGCCTCCCACGAAGGCAACACCGGGAAGGACGTTTGCGGCGAAAGGCTCGACGCTCACGAATTCGCTGTTGAGTAGACCGACACAAATTCATGCATTGACCAGTGCTTCTATTATCTTGCGGCCCGCCAAAAAACCACAAAGTTCAAATCCAGCGTCCAGCGGGCCGGATTTTAAATTGGCGATAAGAAAGAGCGAAGCGCGAAAAGCCGACGCAGATAAATCGCTTGAGAGGATATTGATCATGTTCGACACCAATCCGGAAAAAAAGCGGGCCGCTAGAAAGGTCAGAAAAGAGATCACGTCGGTATTTTCCGACGCCTAG
PROTEIN sequence
Length: 706
MNPAILLFGLVIAAAIAAFVGSLAYAGLYYAFDNSTWMLQALQDDILASYKAARLDLAAGDWHRPAIAAAAGLFAGGAMLVAAITGKKKSTDARFLGPLEARALGLTRTGGVFVGRIGGRLIKVPGGFTQRGSGRRRFLKPMLFGGKKLWIDGDDVGGFVIGPPRSGKGASLIVPNCLLWPDSIVVLDMRGETYEATAGYRSKFSRVLRFSPVDENGDTECYNALDFVAIDPDQRDIDINSIATALLPTPKGDAYWISDARALFAGVTSWVLENPDILDKDKNLGTVLNVVEGGDQPLRAWLEEVANPELRDAWISSFTYTTLARFAVMASKQFDGVYGSLAAAVRPFKNNRILRATARSTFDIRAMRRENMSLYLDFRIQQIASIGPIFNVLMVQFMDYMSRNMMKRGERRVLVLLDEFQNLGKLENALTVATVLGGYGIPCWFFVQSLRSIDNVYTREGRQTLVNSARAQIFLGAQDPEDQRYVSQLLGERKEVTVDKAVSTGVTLFDRKGATISHKTTMRPLMRPDELGAMNETRCIIKLRNQQPILGVRNFYYADSALLKRAWLRVHSPQTRLVSADATGFTTVTSDDNLPCGNPPPTKATPGRTFAAKGSTLTNSLLSRPTQIHALTSASIILRPAKKPQSSNPASSGPDFKLAIRKSEARKADADKSLERILIMFDTNPEKKRAARKVRKEITSVFSDA*