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SCNpilot_expt_1000_bf_scaffold_2993_curated_30

Organism: scnpilot_dereplicated_Rhizobiales_12

near complete RP 44 / 55 MC: 2 BSCG 46 / 51 MC: 5 ASCG 10 / 38 MC: 2
Location: comp(28407..29936)

Top 3 Functional Annotations

Value Algorithm Source
Choline dehydrogenase BetA {ECO:0000313|EMBL:EYR81952.1}; EC=1.1.99.1 {ECO:0000313|EMBL:EYR81952.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 89.8
  • Coverage: 509.0
  • Bit_score: 941
  • Evalue 6.20e-271
CHDH; Choline dehydrogenase, mitochondrial (EC:1.1.99.1) similarity KEGG
DB: KEGG
  • Identity: 87.6
  • Coverage: 509.0
  • Bit_score: 920
  • Evalue 2.50e-265
Choline dehydrogenase BetA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D809_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 89.8
  • Coverage: 509.0
  • Bit_score: 941
  • Evalue 4.40e-271

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1530
GTGCTGCTTCTCGAAGCCGGCGGCAAGGATCGCAATCCACTCTTTCGTCTGCCGATGCTGATGGGCAAACTCTTCCATTCCGGCATCTACAACTGGCATTATCACACCGAGCCGGAGCCCTATCTCGACGGCCGCTCGCTCTACTGGCCGCGTGGCAAGGTTCTCGGCGGAACCTCGACGATCAACGGCATGATCTATGTGCGCGGCAATCGCCACGATTACGACCGCTGGGCGCAGTCCGGTCTGCCCGGCTGGTCCTATGACGAGGTGCTGCCGGCGTTTCGACGCTCGGAGGCGCATGTTCAGCGCAACGGCGAATTCCACGGCGCCGAGGGCGAACTGACCGTCTGCCGGGCGCGGGGACACAATCCGCTGATGGACGTGTTCTGCGCAGCGGGCCAGCAGGCCGGCTATCCCGCCAATGACGACTTCAACGGCGCAAACCAGGAAGGCTTTGGCCGCTACGATTTCACAATCCGCAAGGGCAAGCGCTGGTCGACCTCATGGGCTTTCCTGCGCCCCGCTCTCGGCCGCCCGAACCTGACCGTGCTGACGGGTGCGGAAACCACGCGCCTCATCATTGAAAACGGCCGGGCGCGCGGCGTCGAATATCTCCGGGACGGCAAGCTTGAGAAGGTTTTTACACGCGGCGAAGTCATCCTTTCCTCGGGCGTCGTCAATTCGCCCAAGGCCCTGCTCCTCTCCGGCATCGGACCGGCCGACGAGTTGAGGGCGCTCGGCATCACGCCGGTGCATGACCTGCCCGGCGTCGGCAAGAACCTGCAGGATCACGTCGATTGCGTGATGAGTTGGGAATGCCGCGAGCCGATCACGCTGTTCGGCGATCTGCGCGCCGACAAGCTTATTCCGGCGGTCGCGCAGGGCATGTTGTTCGGAGAAGGTATCACCACCACCTTCCCGTATGAGGCCGGCGCCTTCATCCGCTCGCGCGATGATCTGGTCGCGCCGGATATCCAGCTGCATTTCATGCCGGCGCTGGAGAAGACCGCCAACCTGCATTTCCCCAATCCCTTCGCCAAGAAGCAGGCGGTGGAGGCCAATCACGGCTTTACGATCCGGGTCGGCCCGGTCAATCCGGTCAGCCGCGGCGAAATCACGCTGCGTTCGGCAAACCCGACCGACAAACCGAAGATTCTCGCCAACTACCTCAAGGACGAGTTCGACGTCCGCACGATGATCGATGCCATCCAGCTGACGCGCGAGATCGTCGGGCAGCAGGCCTTCGACCGCTATCGCGGCAACGAGCTGGCGCCCGGCCCCGCCGCTCTCGATGATGCGGCGCTGACGCGCTGGCTGCGGGCAACGGCGATGACCACCNNNNNNNNNNNCGGAACCGCCAAGATGGGCAACGATCCCATGGCGGTGGTCGATGCGCGGCTCAAGGTCCACGGCATCGAGGGCCTGCGTGTCGCCGATGCCTCGATCATGCCGGTCATTTCCAGCGGCAATACCAATGCGCCCGCCATCATGATCGGCGAGAAATGCGCCGAATTCATCCTGAATGCATAA
PROTEIN sequence
Length: 510
VLLLEAGGKDRNPLFRLPMLMGKLFHSGIYNWHYHTEPEPYLDGRSLYWPRGKVLGGTSTINGMIYVRGNRHDYDRWAQSGLPGWSYDEVLPAFRRSEAHVQRNGEFHGAEGELTVCRARGHNPLMDVFCAAGQQAGYPANDDFNGANQEGFGRYDFTIRKGKRWSTSWAFLRPALGRPNLTVLTGAETTRLIIENGRARGVEYLRDGKLEKVFTRGEVILSSGVVNSPKALLLSGIGPADELRALGITPVHDLPGVGKNLQDHVDCVMSWECREPITLFGDLRADKLIPAVAQGMLFGEGITTTFPYEAGAFIRSRDDLVAPDIQLHFMPALEKTANLHFPNPFAKKQAVEANHGFTIRVGPVNPVSRGEITLRSANPTDKPKILANYLKDEFDVRTMIDAIQLTREIVGQQAFDRYRGNELAPGPAALDDAALTRWLRATAMTTXXXXGTAKMGNDPMAVVDARLKVHGIEGLRVADASIMPVISSGNTNAPAIMIGEKCAEFILNA*