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SCNpilot_expt_1000_bf_scaffold_2993_curated

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Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2993_curated_1
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(94..786)
DNA (693bp) protein (231aa)
Crp/Fnr family transcriptional regulator n=1 Tax=Pseudochrobactrum sp. AO18b RepID=UPI0003A234A6
Crp/Fnr family transcriptional regulator {ECO:0000313|EMBL:EXL02040.1}; TaxID=529 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi.;"
CRP/FNR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2993_curated_2
Brucella inopinata, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(863..1858)
DNA (996bp) protein (332aa)
thiamine biosynthesis protein ApbE n=1 Tax=Pseudochrobactrum sp. AO18b RepID=UPI0003B7BB5E
NosX protein {ECO:0000313|EMBL:EFM55733.1}; TaxID=470735 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella inopinata BO1.;"
nosX; thiamine biosynthesis lipoprotein; K03734 thiamine biosynthesis lipoprotein
SCNpilot_expt_1000_bf_scaffold_2993_curated_3
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1980..2501)
DNA (522bp) protein (174aa)
NosL protein n=1 Tax=Ochrobactrum anthropi RepID=C0A1F3_OCHAN
Copper chaperone {ECO:0000313|EMBL:EXL03369.1}; TaxID=529 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi.;"
NosL family protein
SCNpilot_expt_1000_bf_scaffold_2993_curated_4
Brucella microti, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2498..3328)
DNA (831bp) protein (277aa)
NosY permease n=1 Tax=Pseudochrobactrum sp. AO18b RepID=UPI0003A0B837
nosY; nitrous-oxide reductase, NosY component
Nitrous-oxide reductase, nosY component {ECO:0000313|EMBL:ACU49409.1}; TaxID=568815 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella microti (strain CCM 4915).;"
SCNpilot_expt_1000_bf_scaffold_2993_curated_5
Brucella neotomae, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3325..4233)
DNA (909bp) protein (303aa)
ABC transporter ATP-binding protein n=1 Tax=Pseudochrobactrum sp. AO18b RepID=UPI0003A39C35
NosF protein {ECO:0000313|EMBL:EEY02939.1}; TaxID=520456 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella neotomae 5K33.;"
hypothetical protein; K01990 ABC-2 type transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_2993_curated_6
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4230..5630)
DNA (1401bp) protein (467aa)
NosD protein n=1 Tax=Ochrobactrum anthropi RepID=C0A1F0_OCHAN
Carbohydrate-binding protein {ECO:0000313|EMBL:EXL03366.1}; TaxID=529 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi.;"
periplasmic copper-binding; K07218 nitrous oxidase accessory protein
SCNpilot_expt_1000_bf_scaffold_2993_curated_7
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5636..7552)
DNA (1917bp) protein (639aa)
Nitrous-oxide reductase {ECO:0000256|HAMAP-Rule:MF_00716}; EC=1.7.2.4 {ECO:0000256|HAMAP-Rule:MF_00716};; N(2)OR {ECO:0000256|HAMAP-Rule:MF_00716}; N2O reductase {ECO:0000256|HAMAP-Rule:MF_00716}; Flags: Precursor;; TaxID=529 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi.;"
nitrous-oxide reductase; K00376 nitrous-oxide reductase [EC:1.7.2.4]
nitrous-oxide reductase n=1 Tax=Ochrobactrum anthropi RepID=UPI00028999B4
SCNpilot_expt_1000_bf_scaffold_2993_curated_8
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7578..8078)
DNA (501bp) protein (167aa)
FMN-binding domain protein n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X743_OCHA4
FMN-binding domain-containing protein
NosR protein {ECO:0000313|EMBL:BAH28826.1}; TaxID=529 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi.;"
SCNpilot_expt_1000_bf_scaffold_2993_curated_9
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8020..8589)
DNA (570bp) protein (190aa)
FMN-binding protein n=1 Tax=Pseudochrobactrum sp. AO18b RepID=UPI0003A50D71
FMN-binding domain-containing protein
FMN-binding protein {ECO:0000313|EMBL:EXL03364.1}; TaxID=529 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi.;"
SCNpilot_expt_1000_bf_scaffold_2993_curated_10
Brucella inopinata, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8550..9869)
DNA (1320bp) protein (440aa)
FMN-binding protein n=1 Tax=Pseudochrobactrum sp. AO18b RepID=UPI0003A50D71
Transcriptional regulator NosR {ECO:0000313|EMBL:EFM55727.1}; TaxID=470735 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella inopinata BO1.;"
FMN-binding domain-containing protein
SCNpilot_expt_1000_bf_scaffold_2993_curated_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10189..10410
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CLU3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR77641.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2993_curated_12
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10565..10918
DNA (354bp) protein (118aa)
Uncharacterized protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LFQ0_RHITR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGB69506.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_2993_curated_13
Oceanibulbus indolifex, Oceanibulbus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11091..11981)
DNA (891bp) protein (297aa)
Uncharacterized protein n=1 Tax=Oceanibulbus indolifex HEL-45 RepID=A9EGF2_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EDQ02983.1}; TaxID=391624 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanibulbus.;" source="Oceanibulbus indolifex HEL-45.;"
Allergen V5/Tpx-1 related
SCNpilot_expt_1000_bf_scaffold_2993_curated_14
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12341..14527
DNA (2187bp) protein (729aa)
Putative sensor histidine kinase id=2549649 bin=GWF1_Rhodobacteraceae_65_7 species=Oligotropha carboxidovorans genus=Oligotropha taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
sensor histidine kinase
Tax=GWF1_Rhodobacteraceae_65_7_curated
SCNpilot_expt_1000_bf_scaffold_2993_curated_15
Rhodospirillaceae bacterium BRH_c57, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14530..15177
DNA (648bp) protein (216aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Alcanivorax dieselolei (strain DSM 16502 / CGMCC 1.3690 / B-5) RepID=K0C980_ALCDB
Uncharacterized protein {ECO:0000313|EMBL:KJS45906.1}; TaxID=1629718 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae.;" source="Rhodospirillaceae bacterium BRH_c57.;"
LuxR family two component transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2993_curated_16
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15323..16102
DNA (780bp) protein (260aa)
Pyrroline-5-carboxylate reductase (EC:1.5.1.2); K00286 pyrroline-5-carboxylate reductase [EC:1.5.1.2]
pyrroline-5-carboxylate reductase n=1 Tax=Rhizobium giardinii RepID=UPI000378B432
Pyrroline-5-carboxylate reductase {ECO:0000313|EMBL:AHK47046.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
SCNpilot_expt_1000_bf_scaffold_2993_curated_17
R_Alphaproteobacteria_46_13, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16225..17319
DNA (1095bp) protein (365aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NJQ2_AFIFE
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_46_13_curated
SCNpilot_expt_1000_bf_scaffold_2993_curated_18
Paracoccus versutus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17403..18509)
DNA (1107bp) protein (369aa)
ABC-2 type transporter n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1BC71_PARDP
Mannose-1-phosphate guanyltransferase {ECO:0000313|EMBL:KGJ02616.1}; TaxID=34007 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus versutus (Thiobacillus versutus).;"
ABC-2 type transporter; K09686 antibiotic transport system permease protein
SCNpilot_expt_1000_bf_scaffold_2993_curated_19
Paracoccus versutus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18506..19423)
DNA (918bp) protein (306aa)
multidrug ABC transporter ATP-binding protein n=1 Tax=Paracoccus sp. TRP RepID=UPI000225F675
Multidrug ABC transporter ATP-binding protein {ECO:0000313|EMBL:KGJ02615.1}; TaxID=34007 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus versutus (Thiobacillus versutus).;"
ABC transporter related; K09687 antibiotic transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_2993_curated_20
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19420..20361)
DNA (942bp) protein (314aa)
Secretion protein HlyD family protein n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1BC73_PARDP
secretion protein HlyD family protein; K01993 HlyD family secretion protein
Secretion protein HlyD family protein {ECO:0000313|EMBL:ABL73117.1}; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
SCNpilot_expt_1000_bf_scaffold_2993_curated_21
Paracoccus sp. 5503, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20354..20989)
DNA (636bp) protein (212aa)
Transcriptional regulator, TetR family n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1BC74_PARDP
TetR family transcriptional regulator {ECO:0000313|EMBL:KGJ19609.1}; TaxID=1525717 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus sp. 5503.;"
TetR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2993_curated_22
Pandoraea sp. RB-44, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21176..21466)
DNA (291bp) protein (97aa)
Plasmid stabilization protein n=1 Tax=Pandoraea sp. RB-44 RepID=V5UDL3_9BURK
Plasmid stabilization protein {ECO:0000313|EMBL:AHB75307.1}; TaxID=1380774 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea sp. RB-44.;"
addiction module toxin, RelE/StbE family
SCNpilot_expt_1000_bf_scaffold_2993_curated_23
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21454..21732)
DNA (279bp) protein (93aa)
CopG family transcriptional regulator n=1 Tax=Rhizobium sp. JGI 0001005-K05 RepID=UPI0003652CF0
Transcriptional regulator, CopG family {ECO:0000313|EMBL:CDM55925.1}; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
transcriptional regulator, CopG family
SCNpilot_expt_1000_bf_scaffold_2993_curated_24
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21811..23319)
DNA (1509bp) protein (503aa)
5-methylthioadenosine/S-adenosylhomocysteine deaminase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EWJ1_9RHIZ
Guanine deaminase {ECO:0000313|EMBL:AHK46978.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2993_curated_25
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23342..24238)
DNA (897bp) protein (299aa)
Inner-membrane translocator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CV78_9RHIZ
Inner-membrane translocator {ECO:0000313|EMBL:EYR77873.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
inner-membrane translocator
SCNpilot_expt_1000_bf_scaffold_2993_curated_26
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24235..25272)
DNA (1038bp) protein (346aa)
Putative ABC transporter, permease n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CF70_9RHIZ
Putative ABC transporter, permease {ECO:0000313|EMBL:EYR77874.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ABC transporter permease
SCNpilot_expt_1000_bf_scaffold_2993_curated_27
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25269..26849)
DNA (1581bp) protein (527aa)
Monosaccharide-transporting ATPase {ECO:0000313|EMBL:EYR77875.1}; EC=3.6.3.17 {ECO:0000313|EMBL:EYR77875.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
monosaccharide-transporting ATPase (EC:3.6.3.17)
Monosaccharide-transporting ATPase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EWJ5_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2993_curated_28
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26968..28029)
DNA (1062bp) protein (354aa)
ABC-type transport system substrate-binding protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EZI5_9RHIZ
ABC-type transport system substrate-binding protein {ECO:0000313|EMBL:EYR81954.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ABC transporter substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_2993_curated_29
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28076..28396)
DNA (321bp) protein (107aa)
NIPSNAP family containing protein n=3 Tax=Rhizobium meliloti RepID=F6C061_SINMB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDH82557.1}; TaxID=1401243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti RU11/001.;"
SCNpilot_expt_1000_bf_scaffold_2993_curated_30
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28407..29936)
DNA (1530bp) protein (510aa)
Choline dehydrogenase BetA {ECO:0000313|EMBL:EYR81952.1}; EC=1.1.99.1 {ECO:0000313|EMBL:EYR81952.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
CHDH; Choline dehydrogenase, mitochondrial (EC:1.1.99.1)
Choline dehydrogenase BetA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D809_9RHIZ
Displaying items 1-30 of 38 in total

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