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SCNpilot_expt_1000_bf_scaffold_2824_curated_23

Organism: scnpilot_dereplicated_Rhizobiales_12

near complete RP 44 / 55 MC: 2 BSCG 46 / 51 MC: 5 ASCG 10 / 38 MC: 2
Location: 22739..23992

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoD n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4FE03_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 97.1
  • Coverage: 417.0
  • Bit_score: 785
  • Evalue 1.90e-224
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 97.1
  • Coverage: 417.0
  • Bit_score: 788
  • Evalue 5.50e-225
sigA; RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor similarity KEGG
DB: KEGG
  • Identity: 96.2
  • Coverage: 417.0
  • Bit_score: 782
  • Evalue 8.80e-224

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Taxonomy

Rhizobium sp. YS-1r → Rhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1254
ATGGAAGCCGAGTTGCGCCCGCAGGTCATGGAAACCCTCGACCTGATCGCCGATACCTACAAGAAGCTCCGCAAGCTGCAGGACCAGCAGGTCGAGGCGCGCCTTGCAGCCGTCGGCACGCTGTCGTCCGGCCAGGAGCGCCGCTACAAGGAATTGAAGGATCAGTTGATCACGGCGGTCAAGTCGCTGTCGCTCAACCAGAACCGCATCGATTCGCTGGTCGAGCAGCTCTACGACATCAACAAGCGCCTCGTGCAGAACGAGGGCCGCCTGCTGCGTCTGGCCGAATCCTACGGGGTTCGCCGCGAAAGCTTCCTCGAACAGTATCAGGGCGCGGAGCTCGATCCGAACTGGATGAAGTCGATCTCGAACCTCGCCGCCAAGGGCTGGAAGGAATTCGCCCGCGCCGAGAATTCAACGATCCGCGACATCCGCCAGGAGATCCAGAACCTCGCCACCGAAACCGGTATCTCGGTGACGGAATTCCGCCGCATCGTGCATATGGTGCAGAAGGGCGAGCGCGAGGCGCGCATCGCCAAGAAGGAAATGGTCGAGGCAAACCTGCGCCTCGTCATCTCCATCGCCAAGAAATACACGAACCGCGGCCTGCAGTTCCTCGACCTTATCCAGGAAGGCAATATCGGCCTGATGAAGGCGGTCGACAAGTTCGAGTATCGCCGCGGCTACAAGTTCTCGACCTATGCCACCTGGTGGATCCGGCAGGCGATCACCCGTTCGATCGCCGACCAGGCCCGCACCATCCGTATTCCGGTGCATATGATCGAGACGATCAACAAGATCGTCCGCACCTCGCGCCAGATGCTGCACGAAATCGGCCGCGAGCCGACGCCGGAAGAGCTGGCCGAAAAGCTGGCCATGCCGCTGGAAAAGGTGCGCAAGGTGCTGAAGATCGCCAAGGAGCCGATCTCGCTCGAAACCCCGGTGGGTGACGAAGAGGATTCGCATCTCGGCGATTTCATCGAGGACAAGAACGCGCTGCTGCCGATCGACGCCGCCATCCAGGCGAACCTGCGCGAGACGACCACCCGCGTGCTGGCCTCGCTGACGCCGCGTGAGGAACGCGTGCTGCGCATGCGCTTCGGCATCGGCATGAACACCGACCACACGCTGGAAGAAGTCGGCCAGCAGTTCTCGGTGACCCGCGAACGTATCCGCCAGATCGAGGCGAAAGCGCTGCGCAAGCTGAAGCATCCGAGCCGCTCGCGCAAGCTGCGCTCCTTCCTCGACAGCTAA
PROTEIN sequence
Length: 418
MEAELRPQVMETLDLIADTYKKLRKLQDQQVEARLAAVGTLSSGQERRYKELKDQLITAVKSLSLNQNRIDSLVEQLYDINKRLVQNEGRLLRLAESYGVRRESFLEQYQGAELDPNWMKSISNLAAKGWKEFARAENSTIRDIRQEIQNLATETGISVTEFRRIVHMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDKNALLPIDAAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDS*