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SCNpilot_expt_1000_bf_scaffold_2824_curated

Search features with annotation key words

Displaying items 1-30 of 88 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2824_curated_1
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..392)
DNA (390bp) protein (130aa)
Glycosyltransferase (EC:2.4.1.-)
LpsB n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HG44_9RHIZ
LpsB {ECO:0000313|EMBL:EPE97837.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
SCNpilot_expt_1000_bf_scaffold_2824_curated_2
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(766..1002)
DNA (237bp) protein (79aa)
transcription elongation factor GreA n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI000371DDDD
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
greA; transcription elongation factor GreA
SCNpilot_expt_1000_bf_scaffold_2824_curated_3
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1476..2708
DNA (1233bp) protein (411aa)
Putative DNA modification/repair radical SAM protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2297 RepID=J0W5I8_RHILT
Putative DNA modification/repair radical SAM protein {ECO:0000313|EMBL:EJC80448.1}; TaxID=754762 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2297.;"
radical SAM protein
SCNpilot_expt_1000_bf_scaffold_2824_curated_4
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2705..4201
DNA (1497bp) protein (499aa)
phage SPO1 DNA polymerase-related protein; K02334 DNA polymerase bacteriophage-type [EC:2.7.7.7]
Uracil DNA glycosylase (Fragment) n=1 Tax=Rhizobium sp. Pop5 RepID=K0VL02_9RHIZ
Uracil DNA glycosylase {ECO:0000313|EMBL:EJZ19637.1}; Flags: Fragment;; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
SCNpilot_expt_1000_bf_scaffold_2824_curated_5
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4356..5777)
DNA (1422bp) protein (474aa)
carB; carbamoyl phosphate synthase large subunit (EC:6.3.5.5); K01955 carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
Carbamoyl-phosphate synthase large chain {ECO:0000256|HAMAP-Rule:MF_01210}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01210};; Carbamoyl-phosphate synthetase ammonia chain {ECO:0000256|HAMAP-Rule:MF_01210}; TaxID=216596 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae (strain 3841).;"
Carbamoyl-phosphate synthase large chain n=1 Tax=Rhizobium leguminosarum bv. viciae (strain 3841) RepID=Q1MDS0_RHIL3
SCNpilot_expt_1000_bf_scaffold_2824_curated_6
unknown

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6196..6456
DNA (261bp) protein (87aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2824_curated_7
unknown

Not on your lists

6491..6592
DNA (102bp) protein (34aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2824_curated_8
unknown

Not on your lists

7461..7583
DNA (123bp) protein (41aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2824_curated_9
Rhizobium sp. CCGE 510, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8069..9004
DNA (936bp) protein (312aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CCGE 510 RepID=J5Q9V3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJT05918.1}; TaxID=1132836 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CCGE 510.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2824_curated_10
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9013..9834)
DNA (822bp) protein (274aa)
Uncharacterized protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V9Y6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ENN87877.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2824_curated_11
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9903..10418
DNA (516bp) protein (172aa)
Putative membrane protein n=1 Tax=Rhizobium sp. CF080 RepID=J2SU60_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EUB96468.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2824_curated_12
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10473..11381
DNA (909bp) protein (303aa)
Putative metalloprotease n=1 Tax=Rhizobium sp. CF080 RepID=J2JMP1_9RHIZ
Zinc protease {ECO:0000313|EMBL:CDN48633.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
hypothetical protein; K07054
SCNpilot_expt_1000_bf_scaffold_2824_curated_13
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11424..12416)
DNA (993bp) protein (331aa)
aldo/keto reductase n=1 Tax=Rhizobium meliloti RepID=UPI000369AB6F
putative oxidoreductase, aldo/keto reductase family
Putative oxidoreductase, aldo/keto reductase family {ECO:0000313|EMBL:CCE95967.1}; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
SCNpilot_expt_1000_bf_scaffold_2824_curated_14
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12516..13454
DNA (939bp) protein (313aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI0003723D36
putative LysR family transcriptional regulator
Putative LysR family transcriptional regulator {ECO:0000313|EMBL:CCE95968.1}; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
SCNpilot_expt_1000_bf_scaffold_2824_curated_15
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13763..15004
DNA (1242bp) protein (414aa)
MFS transporter n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00036E8542
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:EUB96475.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
major facilitator superfamily protein; K08151 MFS transporter, DHA1 family, tetracycline resistance protein
SCNpilot_expt_1000_bf_scaffold_2824_curated_16
unknown

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comp(15294..15590)
DNA (297bp) protein (99aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2824_curated_17
unknown

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comp(15705..15818)
DNA (114bp) protein (38aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2824_curated_18
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16007..16639
DNA (633bp) protein (211aa)
multidrug transporter MatE n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI0003809C37
MATE efflux family protein {ECO:0000313|EMBL:EPE97825.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
norM; multidrug resistance protein NorM; K03327 multidrug resistance protein, MATE family
SCNpilot_expt_1000_bf_scaffold_2824_curated_19
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16696..17901)
DNA (1206bp) protein (402aa)
Carbamoyl-phosphate synthase small chain {ECO:0000256|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01209};; Carbamoyl-phosphate synthetase glutamine chain {ECO:0000256|HAMAP-Rule:MF_01209}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
carA; carbamoyl phosphate synthase small subunit (EC:6.3.5.5); K01956 carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
Carbamoyl-phosphate synthase small chain n=1 Tax=Rhizobium sp. Pop5 RepID=K0W7R3_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2824_curated_20
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18184..18636
DNA (453bp) protein (151aa)
aspartyl-tRNA amidotransferase subunit B n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI000360C1A8
GatB family aspartyl/glutamyl-tRNA amidotransferase protein {ECO:0000313|EMBL:AJD41926.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
hypothetical protein; K09117 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2824_curated_21
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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19085..21082
DNA (1998bp) protein (666aa)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811};; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
dnaG; DNA primase; K02316 DNA primase [EC:2.7.7.-]
DNA primase n=1 Tax=Rhizobium mongolense RepID=UPI0003B34213
SCNpilot_expt_1000_bf_scaffold_2824_curated_22
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21193..21540
DNA (348bp) protein (116aa)
Hypothetical conserved protein n=2 Tax=Rhizobium etli RepID=B3PUI3_RHIE6
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EGE56813.1}; TaxID=993047 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli CNPAF512.;"
SCNpilot_expt_1000_bf_scaffold_2824_curated_23
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22739..23992
DNA (1254bp) protein (418aa)
RNA polymerase sigma factor RpoD n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4FE03_9RHIZ
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
sigA; RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor
SCNpilot_expt_1000_bf_scaffold_2824_curated_24
bacterium YEK0313, Bacteria

Not on your lists

comp(24047..24286)
DNA (240bp) protein (80aa)
Uncharacterized protein n=1 Tax=Streptomyces coelicoflavus ZG0656 RepID=H1QFJ4_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:CEJ13300.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2824_curated_25
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24519..25556
DNA (1038bp) protein (346aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3KM48_RHISN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACP23484.1}; TaxID=394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium sp. (strain NGR234).;"
SCNpilot_expt_1000_bf_scaffold_2824_curated_26
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25561..26388)
DNA (828bp) protein (276aa)
Transcriptional regulator, AraC family n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ESM9_9RHIZ
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EYR81044.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
araC family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2824_curated_27
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26463..27404
DNA (942bp) protein (314aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CV71_9RHIZ
Putative permease {ECO:0000313|EMBL:EYR81045.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2824_curated_28
unknown

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comp(27334..27759)
DNA (426bp) protein (142aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2824_curated_29
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27839..28414
DNA (576bp) protein (192aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI000360248C
Uncharacterized protein {ECO:0000313|EMBL:CDN96204.1}; Flags: Precursor;; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
conserved exported protein of unknown function
SCNpilot_expt_1000_bf_scaffold_2824_curated_30
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28502..28750
DNA (249bp) protein (83aa)
Uncharacterized protein n=2 Tax=Rhizobium leguminosarum bv. trifolii RepID=B5ZXD5_RHILW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EJB07483.1}; TaxID=754764 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM597.;"
Displaying items 1-30 of 88 in total

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