ggKbase home page

SCNpilot_expt_1000_bf_scaffold_1866_curated_10

Organism: scnpilot_dereplicated_Rhizobiales_12

near complete RP 44 / 55 MC: 2 BSCG 46 / 51 MC: 5 ASCG 10 / 38 MC: 2
Location: comp(8526..12032)

Top 3 Functional Annotations

Value Algorithm Source
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 86.2
  • Coverage: 999.99
  • Bit_score: 2015
  • Evalue 0.0
Transcription-repair-coupling factor n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UZP8_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 86.2
  • Coverage: 999.99
  • Bit_score: 2015
  • Evalue 0.0
mfd; transcription-repair coupling factor similarity KEGG
DB: KEGG
  • Identity: 86.0
  • Coverage: 999.99
  • Bit_score: 2012
  • Evalue 0.0

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Rhizobium freirei → Rhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 3507
ATGATTCCCGGTTTCGATCCGAAGCTGCTTGCGAGCGTCGATTCGGCGCTGACCGTCGCCAATGTGCCGGCGGGCATGGAGCCGTTTCTCATCGCCGAACTGGCGCGCACCGGCCGTCCCGTCGCCTATGTGCTGTCGGACGGCCAGCGCATGGCCGATATCGAGCAGATGCTGGGTTTTGCCGCGCCCGATATTCCGGTCATGACGCTGCCGGCCTGGGACTGTTTGCCCTATGACCGCGTCTCGCCCAGCGCCGATGTCTCCGCGCGCCGGCTGGCGGCGCTCTCCGGCCTGATCGCCTATGCGAAGAAACCGCATCCGGCGATCCTGCTGATCACCGTCAACGCGATGCTGCAGAAGATCGCGCCGCGCGAGATCATCGAAAGCCTCGCCTTCTCCGCAAAGCCCGGCCAGACGATCCGCATGGACGATATCGCCGCACGGCTGGAGCGCAACGGCTTCGACCGGGTCGCCACCGTGCGCGAGGTCGGGGAATTCGCCGTGCGCGGCGGCATTCTCGATGTCTTCGTGCCGGGCACGGAGGAGCCGGTGCGCCTCGATTTCTTCGGCGATTCGCTTGAAACAATCCGCACCTTCGATCCCGCCAGCCAGCGCACCACCGGCCAGGCCCGCTCGCTCGATCTCAACCCGATGAGCGAGGTGACGCTGACGCCGGACACGATCAGCCGTTTCCGCAAGAATTACCTGTCGCTGTTCGGCGCGGCAACCCGCGACGACGCGCTGTATGTCGCCGTCTCCGAGGGCCGCCGTTATGCCGGCATGGAGCATTGGCTGCCGCTGTTCTACGAAAAGCTGGAAACCGCCTTCGATTACCTCAAAGGCTTCCTGATCGTCACCGACCATACGGTGCGGGAGGCGGCGGAAGAGCGCTCCAAGCTGGTGCTCGATTATTTCGAGGCGCGGCAAAATACCGGCCATCAGGGCAAGGGCCAGATGGCGCAGGGCACGCCCTACAAGCCGGTCTCCCCCGGCCAGCTCTATCTCGACGCGAAGGCGTTCGGCAAAACGCTGGATATGTTCGCGGCGATCCGCCTCTCGCCCTTCAACGAGATGGAAGGCGTCGACCGCAAGGTCGTCACCATCGACGCCCATGCCGGCCCGCGCTGGGCCAAGACCGCGAGCGAGTCGGAAAGCGGCGAGCGCATCAATGTCTTCGATCTCGCCGTCAAGCATATCGGCGAGCGCCGCGCCAAGGGCCGCAAGGTGCTGATCTCGGGCTGGTCGGAAGGCTCGCTCGACCGGTTGCTGCAGGTGCTGAACGAGCACGGGCTGGAGCGCATCAAGCCTGTCAAGGCGCTGAAGGACTTGTCCAAGCTCGACAAGGGCGAGGCGGCCTCGACGGTTCTCAGCATCGAATCCGGCTTCGAGGCCGGCGATCTCGTCGTCATCGGCGAGCAGGATATTCTCGGCGACCGCATGGTGCGTCGCGCCAAGCGCCGCAAGCGCGGGGCGGATTTCATCGCCGAAGTCGCAGGTCTGGACGAAGGCTCCATCGTCGTCCATGCCGAGCACGGCATCGGCCGCTTCATCGGCCTGAAAACCATCGAGGCGGCGGGTGCCCCCCACGCCTGCCTTGAGCTGTTATATGCCGACGACGCCAAACTGTTCCTGCCGGTCGAAAACATCGACCTGCTGTCGCGCTACGGCGGCGAGGGCACCGAGGTGCAGCTCGACAAACTCGGCGGCGGCGCATGGCAGATGCGCAAGGCCAAGCTCAAGAAAAAGCTGCTGGATATGGCCGACGGCCTGATCCGCATCGCCGCCGAGCGCATGATGCGCCATGCGCCGGTGCTGACCGCGCCGGATGGGCTCTATGACGAATTCGCCGCCCGCTTCCCCTATGACGAGACCGACGACCAGATGACCGCCATCGATTCGGTGCGCGACGATCTCGGCGCGGGACGGCCGATGGATCGCCTCGTCTGCGGCGATGTCGGCTTCGGCAAGACGGAAGTGGCGCTGCGCGCCGCCTTCGTCGCCGCCATGAACGGCGTGCAGGTGGCGGTCGTCGTGCCGACGACGCTGCTCGCCCGCCAGCATTTCAAAACCTTTTCGGAGCGCCTGCGTGGCTTCCCGATCCGCATCGCGCAGGCCTCGCGCCTCGTCGGCTCCAAGGAGTTGTCGCAGACCAAGAAGGAAGTGGCCGATGGCAAGGTGGATGTGGTGGTCGGCACCCATGCGCTGCTCGGCTCCGGCATCAACTTCGCCAATCTTGGCCTCTTGATCATCGACGAGGAGCAGCATTTCGGCGTCAAGCACAAGGAACGGCTGAAGGAGCTGAAGAGCGACGTTCATGTGTTGACGCTCTCGGCGACGCCGATCCCGCGCACCCTGCAACTGGCGATGACCGGCGTGCGCGAATTGTCGCTGATCACCACGCCGCCGGTGGACCGCATGGCGGTGCGCACCTTCATCTCGCCCTTCGATCCGCTTGTGATCCGCGAGACGCTGATGCGCGAGCATTATCGCGGCGGCCAAAGCTTCTATGTCTGCCCGCGCCTGTCGGATCTGGCCGATATCCAGGCCTTCCTGCAATCGGATGTGCCGGAGCTGAAGGTCGCCATCGCCCATGGCCAGATGGCGGCGGGCGAGCTGGAAGACATCATGAATGCCTTCTACGACGGCAAATACGACGTGCTGCTCTCGACCACCATCGTCGAATCCGGCCTCGACGTTCCCACAGCCAATACGCTGATCGTCCACCGCGCCGATATGTTCGGCCTCGCACAGCTTTACCAGATCCGCGGCCGCGTCGGCCGTTCCAAGGTGCGCGCCTTCGCGCTTCTGACGCTGCCGGTCAACAAGGTGCTGACCACGGGTGCCGAACGGCGCCTCAAGGTGCTGCAATCGCTGGATACGCTGGGCGCCGGCTTCCAGCTCGCCAGCCACGACCTCGACATCCGCGGCGCCGGCAACCTGCTCGGCGAAGAGCAATCCGGCCATATCAAGGAAGTCGGCTTCGAGCTTTACCAGCAGATGCTGGAGGAGGCGGTGGCCGAGGTGAAGGGCGACGACGACATCGTCGACAGCGGCTGGTCGCCGCAGATCTCGGTGGGCACGCCGGTGATGATCCCGGACGACTACGTGCCCGACCTGCACCTGCGCATGGGCCTCTATCGCCGCCTCGGCGAAATCACCGAACTGCGCGATATCGACGGTTTTGGCGCGGAGATGATCGACCGTTTCGGGCCGCTGCCCATCGAAGTGCAGCACCTCCTGAAGATCGTCTACGTCAAGTCGCTGTGCCGCAAGGCCAATGTCGAGAAGCTGGAGGCCGGGCCGAAGGGCGTCGTCGTGCAGTTCCGCAACCGCGAATTCCCCGATCCGGCGGCATTGGTCGGCTATATCGCCAAGCAGGGAACGATGGCGAAGATCCGCCCCGATCACAGCGTCTTCCTCAGCCGCGACCTGCCGACGCCGGAAAAGCGGCTGGCGGGTGCTGCCATGGTCATGACCCAGCTTGCGGGGCTTCTCGACAAAAAGTGA
PROTEIN sequence
Length: 1169
MIPGFDPKLLASVDSALTVANVPAGMEPFLIAELARTGRPVAYVLSDGQRMADIEQMLGFAAPDIPVMTLPAWDCLPYDRVSPSADVSARRLAALSGLIAYAKKPHPAILLITVNAMLQKIAPREIIESLAFSAKPGQTIRMDDIAARLERNGFDRVATVREVGEFAVRGGILDVFVPGTEEPVRLDFFGDSLETIRTFDPASQRTTGQARSLDLNPMSEVTLTPDTISRFRKNYLSLFGAATRDDALYVAVSEGRRYAGMEHWLPLFYEKLETAFDYLKGFLIVTDHTVREAAEERSKLVLDYFEARQNTGHQGKGQMAQGTPYKPVSPGQLYLDAKAFGKTLDMFAAIRLSPFNEMEGVDRKVVTIDAHAGPRWAKTASESESGERINVFDLAVKHIGERRAKGRKVLISGWSEGSLDRLLQVLNEHGLERIKPVKALKDLSKLDKGEAASTVLSIESGFEAGDLVVIGEQDILGDRMVRRAKRRKRGADFIAEVAGLDEGSIVVHAEHGIGRFIGLKTIEAAGAPHACLELLYADDAKLFLPVENIDLLSRYGGEGTEVQLDKLGGGAWQMRKAKLKKKLLDMADGLIRIAAERMMRHAPVLTAPDGLYDEFAARFPYDETDDQMTAIDSVRDDLGAGRPMDRLVCGDVGFGKTEVALRAAFVAAMNGVQVAVVVPTTLLARQHFKTFSERLRGFPIRIAQASRLVGSKELSQTKKEVADGKVDVVVGTHALLGSGINFANLGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRTLQLAMTGVRELSLITTPPVDRMAVRTFISPFDPLVIRETLMREHYRGGQSFYVCPRLSDLADIQAFLQSDVPELKVAIAHGQMAAGELEDIMNAFYDGKYDVLLSTTIVESGLDVPTANTLIVHRADMFGLAQLYQIRGRVGRSKVRAFALLTLPVNKVLTTGAERRLKVLQSLDTLGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEVKGDDDIVDSGWSPQISVGTPVMIPDDYVPDLHLRMGLYRRLGEITELRDIDGFGAEMIDRFGPLPIEVQHLLKIVYVKSLCRKANVEKLEAGPKGVVVQFRNREFPDPAALVGYIAKQGTMAKIRPDHSVFLSRDLPTPEKRLAGAAMVMTQLAGLLDKK*