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SCNpilot_expt_1000_bf_scaffold_1786_curated_30

Organism: scnpilot_dereplicated_Rhizobiales_12

near complete RP 44 / 55 MC: 2 BSCG 46 / 51 MC: 5 ASCG 10 / 38 MC: 2
Location: comp(25400..26365)

Top 3 Functional Annotations

Value Algorithm Source
Transcriptional activator NphR n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CMQ7_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 88.6
  • Coverage: 316.0
  • Bit_score: 577
  • Evalue 8.10e-162
Transcriptional activator NphR {ECO:0000313|EMBL:EYR79282.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 88.6
  • Coverage: 316.0
  • Bit_score: 577
  • Evalue 1.10e-161
AraC family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 88.0
  • Coverage: 316.0
  • Bit_score: 569
  • Evalue 6.90e-160

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 966
ATGAAGACGAGCATCACCACGAGCGCGACACGCGCCCCGGACCGCAGCCGCCATTGGCACGAGGCCATCGCCTCGGCCTATTTTCCGCTCGACCTTCGTTTCCGCGATGCCGACCAGTTTTCCGGTGACCTGACGACCTGGCGATTCGGCGGCGTCTCGATCTCGCGTCTGACCTGCGACGCCTTGCAGTATCTACGCCTGCCGCACCATTTTCGCGGCGCGCGCGAAGAGGAATTCCTGGTGACCGTGCCCGCCAAAGCAGAGGTTTTCTTTTCGCAGTGCGGGCGGGAAGTGAATTGCCGACCGGGTGGGTTCTTCCTCGAGCGCAGCAGCGAGCCGTACCGGTTCAGCCATGCCGAGGCGGCGGACATGTGGGTTTTGAAGGTCGAAGCGGATGCGCTGGGCGGGCGCATGCGCGCCCCGGATCGCTTCTGCACCTTGCAATTCGAGGCCAACAACGGCGCCGGCGGCCTGTTCACCGACATGCTGCATCTCCTGCCCGGCCGCTTCGACGGCATGACGCAGGAAGCGAGAACGACGGTGGGCCGCCAGCTTGTCGACCTGCTGGTTCTGGCGATCAAGGCCGACGACCGCGTGCTGACGTCCGGCAACTCCACCGTGCGCAGCGCCCACCTGGCCCGCATCGAGACCTATGCGCGCGCCCATCTCCAGGACTTCCGCCTCGACCCCGAGCGCATCGCCCGTGCCTGTGGCATCTCCACGCGCTACCTGCATGAGCTCTTCAGGGATACCGGCGATACCGTTCGCAACTGGATCCGCGACCAGCGGCTTTCAGCCTGCCGCGAAGCGCTTGCCGACCCGAACAACATCCAGACGGCCGCCGAAATCGCCTATCACTGGGGCTTCAGCGACCAGACCCAGTTCTCCCGCGCCTTCAAGGCACATTTCGGCGTGCCGCCGGGAGAGTTCCGCGAAAGAGCACGCGCCGACGCAGCCTGCGCGTAA
PROTEIN sequence
Length: 322
MKTSITTSATRAPDRSRHWHEAIASAYFPLDLRFRDADQFSGDLTTWRFGGVSISRLTCDALQYLRLPHHFRGAREEEFLVTVPAKAEVFFSQCGREVNCRPGGFFLERSSEPYRFSHAEAADMWVLKVEADALGGRMRAPDRFCTLQFEANNGAGGLFTDMLHLLPGRFDGMTQEARTTVGRQLVDLLVLAIKADDRVLTSGNSTVRSAHLARIETYARAHLQDFRLDPERIARACGISTRYLHELFRDTGDTVRNWIRDQRLSACREALADPNNIQTAAEIAYHWGFSDQTQFSRAFKAHFGVPPGEFRERARADAACA*