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SCNpilot_expt_1000_bf_scaffold_1786_curated

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1786_curated_1
unknown

Not on your lists

1..81
DNA (81bp) protein (27aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1786_curated_2
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

601..867
DNA (267bp) protein (89aa)
Leucine/isoleucine/valine transporter ATP-binding subunit n=1 Tax=Ochrobactrum sp. CDB2 RepID=M3IY09_9RHIZ
Leucine/isoleucine/valine transporter subunit ATP-binding component of ABC superfamily {ECO:0000313|EMBL:CDX56470.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
branched-chain amino acid ABC transporter ATP-binding protein; K01995 branched-chain amino acid transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_1786_curated_3
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

806..1507
DNA (702bp) protein (234aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI000374B0B6
Leucine/isoleucine/valine transporter subunit ATP-binding component of ABC superfamily {ECO:0000313|EMBL:CDX13331.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
ABC transporter related; K01996 branched-chain amino acid transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_1786_curated_4
Rhodococcus sp. JVH1, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1518..2285
DNA (768bp) protein (256aa)
Short chain dehydrogenase family protein n=1 Tax=Rhodococcus sp. JVH1 RepID=J2J0P0_9NOCA
Short chain dehydrogenase family protein {ECO:0000313|EMBL:EJI93357.1}; TaxID=745408 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus sp. JVH1.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_expt_1000_bf_scaffold_1786_curated_5
Ahrensia sp. R2A130, Ahrensia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2394..2978
DNA (585bp) protein (195aa)
XRE family transcriptional regulator n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B4C598
XRE family transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:EFL89630.1}; TaxID=744979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ahrensia.;" source="Ahrensia sp. R2A130.;"
SCNpilot_expt_1000_bf_scaffold_1786_curated_6
Catenulispora acidiphila, Catenulispora, Catenulisporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3002..3766
DNA (765bp) protein (255aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC 102108 / JCM 14897) RepID=C7Q7G2_CATAD
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ACU70250.1}; TaxID=479433 species="Bacteria; Actinobacteria; Catenulisporales; Catenulisporaceae; Catenulispora.;" source="Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC; 102108 / JCM 14897).;"
SCNpilot_expt_1000_bf_scaffold_1786_curated_7
unknown

Not on your lists

comp(3822..4481)
DNA (660bp) protein (220aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1786_curated_8
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5021..6559
DNA (1539bp) protein (513aa)
Extracellular solute-binding protein family 5 n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F859_CONWI
Uncharacterized protein {ECO:0000313|EMBL:KKB85186.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
family 5 extracellular solute-binding protein; K02035 peptide/nickel transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_1786_curated_9
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6651..7577
DNA (927bp) protein (309aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FCD0_CONWI
Uncharacterized protein {ECO:0000313|EMBL:KKB85185.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
binding-protein-dependent transporters inner membrane component
SCNpilot_expt_1000_bf_scaffold_1786_curated_10
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7574..8293
DNA (720bp) protein (240aa)
LmbE family protein n=2 Tax=Sinorhizobium medicae RepID=A6UA54_SINMW
GlcNAc-PI de-N-acetylase {ECO:0000313|EMBL:KKB85184.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
LmbE family protein
SCNpilot_expt_1000_bf_scaffold_1786_curated_11
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8290..9177
DNA (888bp) protein (296aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FCC9_CONWI
Uncharacterized protein {ECO:0000313|EMBL:KKB85210.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
binding-protein-dependent transporters inner membrane component; K02034 peptide/nickel transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1786_curated_12
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9174..10178
DNA (1005bp) protein (335aa)
Oligopeptide/dipeptide ABC transporter, ATPase subunit n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FCC8_CONWI
Uncharacterized protein {ECO:0000313|EMBL:KKB85183.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
oligopeptide/dipeptide ABC transporter ATPase; K02031 peptide/nickel transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_1786_curated_13
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10175..10990
DNA (816bp) protein (272aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00037EC950
Peptide ABC transporter ATP-binding protein {ECO:0000313|EMBL:KGE01854.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
oligopeptide/dipeptide ABC transporter ATPase; K02032 peptide/nickel transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_1786_curated_14
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10987..11775
DNA (789bp) protein (263aa)
UPI0003CE55B7 related cluster n=1 Tax=unknown RepID=UPI0003CE55B7
Uncharacterized protein {ECO:0000313|EMBL:KKB85181.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_expt_1000_bf_scaffold_1786_curated_15
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11812..12963
DNA (1152bp) protein (384aa)
Mandelate racemase/muconate lactonizing protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A0N9_STAND
Mandelate racemase {ECO:0000313|EMBL:KKB85180.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
mandelate racemase/muconate lactonizing protein
SCNpilot_expt_1000_bf_scaffold_1786_curated_16
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12960..13862
DNA (903bp) protein (301aa)
Aldose 1-epimerase n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7Y435_MESOW
Aldose 1-epimerase
Aldose 1-epimerase {ECO:0000313|EMBL:AEH85012.1}; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
SCNpilot_expt_1000_bf_scaffold_1786_curated_17
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13859..15034
DNA (1176bp) protein (392aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI00037587D4
Mandelate racemase {ECO:0000313|EMBL:KKB85172.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
mandelate racemase/muconate lactonizing protein
SCNpilot_expt_1000_bf_scaffold_1786_curated_18
Rhodobacter sphaeroides, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15052..15795
DNA (744bp) protein (248aa)
short-chain dehydrogenase/reductase SDR; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
Short-chain dehydrogenase/reductase SDR n=1 Tax=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) RepID=A3PSA3_RHOS1
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABN79219.1}; TaxID=349101 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9).;"
SCNpilot_expt_1000_bf_scaffold_1786_curated_19
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15819..16712
DNA (894bp) protein (298aa)
Gluconolactonase n=1 Tax=Rhizobium sp. CF080 RepID=J3CWS8_9RHIZ
SMP-30/Gluconolaconase/LRE-like region-containing protein {ECO:0000313|EMBL:EUB98540.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
SMP-30/gluconolaconase/LRE domain-containing protein
SCNpilot_expt_1000_bf_scaffold_1786_curated_20
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16792..17388
DNA (597bp) protein (199aa)
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (EC:4.1.1.-)
Fumarylacetoacetate hydrolase family protein n=1 Tax=Vibrio nigripulchritudo ATCC 27043 RepID=F9TJQ4_9VIBR
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase {ECO:0000313|EMBL:KDP76597.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
SCNpilot_expt_1000_bf_scaffold_1786_curated_21
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17378..17644
DNA (267bp) protein (89aa)
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase/5-carboxymethyl-2-oxo-hex-3-ene-1,7-dioate decarboxylase (EC:4.1.1.- 5.3.3.-)
hypothetical protein n=1 Tax=Hirschia maritima RepID=UPI000379875F
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase {ECO:0000313|EMBL:KDP76597.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
SCNpilot_expt_1000_bf_scaffold_1786_curated_22
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17641..18390
DNA (750bp) protein (250aa)
bdhA3; 3-hydroxybutyrate dehydrogenase (EC:1.1.1.30)
Uncharacterized protein n=1 Tax=Caulobacter crescentus OR37 RepID=R0D6G3_CAUCE
Oxidoreductase {ECO:0000313|EMBL:KDP76598.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
SCNpilot_expt_1000_bf_scaffold_1786_curated_23
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18633..19469
DNA (837bp) protein (279aa)
Extracellular solute-binding protein family 3 n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A0P1_STAND
family 3 extracellular solute-binding protein
Extracellular solute-binding protein family 3 {ECO:0000313|EMBL:ADH91362.1}; Flags: Precursor;; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCNpilot_expt_1000_bf_scaffold_1786_curated_24
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19573..20268
DNA (696bp) protein (232aa)
Polar amino acid ABC transporter, inner membrane subunit n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A0P0_STAND
polar amino acid ABC transporter inner membrane subunit; K02029 polar amino acid transport system permease protein
Polar amino acid ABC transporter, inner membrane subunit {ECO:0000313|EMBL:ADH91361.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCNpilot_expt_1000_bf_scaffold_1786_curated_25
Symbiobacterium thermophilum, Symbiobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20265..21026
DNA (762bp) protein (254aa)
glutamine ABC transporter ATP-binding protein; K02028 polar amino acid transport system ATP-binding protein [EC:3.6.3.21] rbh
Glutamine ABC transporter ATP-binding protein n=1 Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=Q67QJ6_SYMTH
Glutamine ABC transporter ATP-binding protein {ECO:0000313|EMBL:BAD40047.1}; TaxID=292459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Symbiobacteriaceae; Symbiobacterium.;" source="Symbiobacterium thermophilum (strain T / IAM 14863).;"
SCNpilot_expt_1000_bf_scaffold_1786_curated_26
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21214..21834
DNA (621bp) protein (207aa)
Transcriptional regulator, GntR family n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6UA63_SINMW
Uncharacterized protein {ECO:0000313|EMBL:KKB85182.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
GntR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1786_curated_27
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21950..23470)
DNA (1521bp) protein (507aa)
ATPase component of ABC transporters with duplicated ATPase domain n=1 Tax=Rhizobium sp. CF142 RepID=J1STA9_9RHIZ
ATPase component of ABC transporter with duplicated ATPase domains {ECO:0000313|EMBL:EYR80793.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ABC transporter
SCNpilot_expt_1000_bf_scaffold_1786_curated_28
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23838..24992
DNA (1155bp) protein (385aa)
Major facilitator superfamily protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CUY8_9RHIZ
Major facilitator superfamily protein {ECO:0000313|EMBL:EYR80789.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
transmembrane protein
SCNpilot_expt_1000_bf_scaffold_1786_curated_29
Rhizobium lupini, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25068..25379
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Rhizobium lupini HPC(L) RepID=K5D550_RHILU
Uncharacterized protein {ECO:0000313|EMBL:EKJ96675.1}; TaxID=1229491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium lupini HPC(L).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1786_curated_30
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25400..26365)
DNA (966bp) protein (322aa)
Transcriptional activator NphR n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CMQ7_9RHIZ
Transcriptional activator NphR {ECO:0000313|EMBL:EYR79282.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
AraC family transcriptional regulator
Displaying items 1-30 of 32 in total

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