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SCNpilot_expt_1000_bf_scaffold_6196_curated_6

Organism: scnpilot_dereplicated_Rhizobiales_12

near complete RP 44 / 55 MC: 2 BSCG 46 / 51 MC: 5 ASCG 10 / 38 MC: 2
Location: comp(3782..4342)

Top 3 Functional Annotations

Value Algorithm Source
Lytic transglycosylase catalytic n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CMB5_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 88.7
  • Coverage: 186.0
  • Bit_score: 331
  • Evalue 4.50e-88
Soluble lytic murein transglycosylase {ECO:0000313|EMBL:EYR82773.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 88.7
  • Coverage: 186.0
  • Bit_score: 331
  • Evalue 6.30e-88
lytic transglycosylase catalytic similarity KEGG
DB: KEGG
  • Identity: 42.3
  • Coverage: 163.0
  • Bit_score: 120
  • Evalue 4.90e-25

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 561
TTGAAAATTACCCTGCTTTGCCTCCTCCTTTCGACGTCGGCGATATCAGCGCAAGCATGCGACTCCGTCGATAGTGAGCGCGTGCTGGAGCTGGTGCGGACCATCGCCACAGAGGAAGAACTGGACCCCGACCTGGCGCTCGCGGTGGTTGATGTCGAGAGTTCCGGCGGCAGGCACCAGGTCTCCGATGCCGGCGCCGTCGGCATCATGCAGCTGATGCCTGAGACCGCCTCCGACTACGGCGTGACCGACCGCTGCGATCCGGAATCGAACATTCGCGCCGGCGTCCGTTACCTCAAGAAGCTCTATGGCGAGTTCGACGACCCCCTGCTGATGCTGGCCGCCTACAACGCCGGTCCGGAGCGCGTCTACCAGAAGGGCGGCATCCCCGAGTTCAACGAGACAGCCCAGTACATCGTCAAGGTGATGAACCGCTGGACGCTGAACGCCAATGCATCGGCGGCCGAGGAAAAGCGCCGCGGGAACCGCGACGCCCGCAAGGAGACGGTCGCGCTCGCGCCCTCCCCCTGGCGCGACCAACACGTCTGGACGGCCGACTAG
PROTEIN sequence
Length: 187
LKITLLCLLLSTSAISAQACDSVDSERVLELVRTIATEEELDPDLALAVVDVESSGGRHQVSDAGAVGIMQLMPETASDYGVTDRCDPESNIRAGVRYLKKLYGEFDDPLLMLAAYNAGPERVYQKGGIPEFNETAQYIVKVMNRWTLNANASAAEEKRRGNRDARKETVALAPSPWRDQHVWTAD*