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SCNpilot_expt_1000_bf_scaffold_6196_curated

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_6196_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..245)
DNA (243bp) protein (81aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CCX9_9RHIZ
Putative soluble lytic transglycosylase {ECO:0000313|EMBL:EYR82769.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_6196_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(697..867)
DNA (171bp) protein (57aa)
Type IV secretion system protein VirB4 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5BXH1_9RHIZ
Type IV secretion/conjugal transfer ATPase, VirB4 family {ECO:0000313|EMBL:EYR82770.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
type IV secretion/conjugal transfer ATPase; K03199 type IV secretion system protein VirB4
SCNpilot_expt_1000_bf_scaffold_6196_curated_3
unknown

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1879..2616
DNA (738bp) protein (246aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6196_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3120..3410)
DNA (291bp) protein (97aa)
Type IV secretory pathway, VirB3 component n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EFD6_9RHIZ
Type IV secretory pathway, VirB3 component {ECO:0000313|EMBL:EYR82771.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
type IV secretory pathway, VirB3-like; K03198 type IV secretion system protein VirB3
SCNpilot_expt_1000_bf_scaffold_6196_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3412..3735)
DNA (324bp) protein (108aa)
Type IV secretory pathway, VirB2 component n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CHH5_9RHIZ
Type IV secretory pathway, VirB2 component {ECO:0000313|EMBL:EYR82772.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
conjugal transfer protein trbc; K03197 type IV secretion system protein VirB2
SCNpilot_expt_1000_bf_scaffold_6196_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3782..4342)
DNA (561bp) protein (187aa)
Lytic transglycosylase catalytic n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CMB5_9RHIZ
Soluble lytic murein transglycosylase {ECO:0000313|EMBL:EYR82773.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
lytic transglycosylase catalytic
SCNpilot_expt_1000_bf_scaffold_6196_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4430..5047
DNA (618bp) protein (206aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CCY4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR82774.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_6196_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5037..5546
DNA (510bp) protein (170aa)
Putative succinoglycan biosynthesis protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5BXH5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR82775.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
succinoglycan biosynthesis protein ExoI-like protein
SCNpilot_expt_1000_bf_scaffold_6196_curated_9
unknown

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comp(5547..5753)
DNA (207bp) protein (69aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6196_curated_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6211..6348
DNA (138bp) protein (46aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CHI0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR82777.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Displaying 10 items

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