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SCNpilot_expt_1000_bf_scaffold_3492_curated_7

Organism: scnpilot_dereplicated_Rhizobiales_12

near complete RP 44 / 55 MC: 2 BSCG 46 / 51 MC: 5 ASCG 10 / 38 MC: 2
Location: 4510..4749

Top 3 Functional Annotations

Value Algorithm Source
Response regulator PleD {ECO:0000313|EMBL:EYR80736.1}; EC=2.7.7.65 {ECO:0000313|EMBL:EYR80736.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 65.8
  • Coverage: 79.0
  • Bit_score: 99
  • Evalue 1.70e-18
Diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2297 RepID=J0KN83_RHILT similarity UNIREF
DB: UNIREF100
  • Identity: 62.0
  • Coverage: 79.0
  • Bit_score: 97
  • Evalue 6.10e-18
pleD; response regulator PleD; K02488 two-component system, cell cycle response regulator similarity KEGG
DB: KEGG
  • Identity: 62.0
  • Coverage: 79.0
  • Bit_score: 95
  • Evalue 7.30e-18

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 240
ATGCCCGATCCCGTGCCGGAGATGGCGACCGCTGCCGCCGAGCGCCTGCGCGCGGTTATCGAGAACGACCCCTTCCGCCTGAAGGGCGCCGGCGTCGACCTGCATATCACCGCCTCCATCGGTCTGTCCTCGACGCTATGGGGCGCACCGTCGCCGGAGGCGCTGCTCAAGGATGCCGACCGCGCCCTCTACGAGGCCAAGCGCAGCGGCCGCAATCGGGTCGTGGCGGCAGCTGCTTGA
PROTEIN sequence
Length: 80
MPDPVPEMATAAAERLRAVIENDPFRLKGAGVDLHITASIGLSSTLWGAPSPEALLKDADRALYEAKRSGRNRVVAAAA*