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SCNpilot_expt_1000_bf_scaffold_1951_curated_5

Organism: scnpilot_dereplicated_Rhizobiales_12

near complete RP 44 / 55 MC: 2 BSCG 46 / 51 MC: 5 ASCG 10 / 38 MC: 2
Location: comp(3792..4517)

Top 3 Functional Annotations

Value Algorithm Source
Components of type IV pilus n=1 Tax=Agrobacterium sp. (strain H13-3) RepID=F0L4D5_AGRSH similarity UNIREF
DB: UNIREF100
  • Identity: 52.6
  • Coverage: 234.0
  • Bit_score: 244
  • Evalue 1.20e-61
Putative pilus assembly protein {ECO:0000313|EMBL:GAK70474.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 52.9
  • Coverage: 242.0
  • Bit_score: 248
  • Evalue 7.00e-63
ctpE; type IV pilus protein; K02281 pilus assembly protein CpaD similarity KEGG
DB: KEGG
  • Identity: 52.6
  • Coverage: 234.0
  • Bit_score: 244
  • Evalue 3.80e-62

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Taxonomy

Agrobacterium rubi → Agrobacterium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 726
ATGACGCAGACGCCGATGACACAGACACAGCCCGAAGGAAAGTTTTCCGCGATGACCCGACGCCGTCCCCTTCTTTCTCTGCGCCCGGTGCTGGCCCTGGCGCTGGCCGCCGCCGTGCTGCAGGGCTGCGGCAATGTCGATCGCGACGGCATGGCGACCGGCTCGATCGCCAACGACTACCGGCTGCGCCATCCGATCTCGCTGGCCGAGGTTGAACATACGCTCGATCTTCCCGTCGCTTCCGGCGATCAGCGGATGATCCTGACCATGACCGATACGGTCAGCGGCTTCGTGCAGGATTACCGCAAGCGCTCCTCCGGCGTCTTCCGCGTCGAATATCCGGCGGGTGCTGCCAATTCCGCGGCCGCCTACGGTATGCGTCGCGATATCCGCCGCCTGCTGACCCAGGCCGGCGTCCCGGCCCCGCGCATCGTCGAGACCAGCTACCAGACGGCCTCCTCGGCGCCGGCGCCGATCCGGCTGAGCTATGTCGCGACCACCGCCATGACCAACGAATGCGGCCAGTGGCCGGAGGACATCGCCAACAACACGATGTCCAACGAGAACTGGTACAATTTCGGCTGCGCCAGCCAGAACAACCTCGCCGCCCAGCTCGACAATCCGATGGATCTCGTCGCGCCGCGGGCCATGACGCCGATCGACGCCCAGAACCGCACCAAGGTGATCCAGATCTATCGCGGCCAGGGCAAGACCTCGAACAACTGA
PROTEIN sequence
Length: 242
MTQTPMTQTQPEGKFSAMTRRRPLLSLRPVLALALAAAVLQGCGNVDRDGMATGSIANDYRLRHPISLAEVEHTLDLPVASGDQRMILTMTDTVSGFVQDYRKRSSGVFRVEYPAGAANSAAAYGMRRDIRRLLTQAGVPAPRIVETSYQTASSAPAPIRLSYVATTAMTNECGQWPEDIANNTMSNENWYNFGCASQNNLAAQLDNPMDLVAPRAMTPIDAQNRTKVIQIYRGQGKTSNN*