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SCNpilot_expt_1000_bf_scaffold_1951_curated

Search features with annotation key words

Displaying items 1-30 of 97 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1951_curated_1
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..959)
DNA (957bp) protein (319aa)
Putative pilus assembly protein n=1 Tax=Rhizobium sp. RepID=L0NLX4_RHISP
Putative pilus assembly protein {ECO:0000313|EMBL:CCF21909.1}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
pilus assembly protein; K12510 tight adherence protein B
SCNpilot_expt_1000_bf_scaffold_1951_curated_2
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(973..1674)
DNA (702bp) protein (234aa)
Type II secretion system protein E n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F4B6_9RHIZ
Type II secretion system protein E {ECO:0000313|EMBL:EHS52422.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
cpaF; pilus assembly protein CpaF
SCNpilot_expt_1000_bf_scaffold_1951_curated_3
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1766..2437)
DNA (672bp) protein (224aa)
Flp pilus assembly protein, ATPase CpaF n=1 Tax=Rhizobium sp. CF142 RepID=J2KTT9_9RHIZ
Flp pilus assembly protein, ATPase CpaF {ECO:0000313|EMBL:EJJ24577.1}; Flags: Precursor;; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
type II secretion system protein E; K02283 pilus assembly protein CpaF
SCNpilot_expt_1000_bf_scaffold_1951_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2468..3757)
DNA (1290bp) protein (430aa)
Pilus assembly protein CpaE n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D2C1_9RHIZ
Pilus assembly protein CpaE {ECO:0000313|EMBL:EYR80340.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
cpaE; pilus assembly protein, response regulator protein; K02282 pilus assembly protein CpaE
SCNpilot_expt_1000_bf_scaffold_1951_curated_5
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3792..4517)
DNA (726bp) protein (242aa)
Components of type IV pilus n=1 Tax=Agrobacterium sp. (strain H13-3) RepID=F0L4D5_AGRSH
Putative pilus assembly protein {ECO:0000313|EMBL:GAK70474.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
ctpE; type IV pilus protein; K02281 pilus assembly protein CpaD
SCNpilot_expt_1000_bf_scaffold_1951_curated_6
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4528..6081)
DNA (1554bp) protein (518aa)
Type II and III secretion system protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CDE0_9RHIZ
Pilus assembly protein CpaC {ECO:0000313|EMBL:KGD86626.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
type II and III secretion system protein; K02280 pilus assembly protein CpaC
SCNpilot_expt_1000_bf_scaffold_1951_curated_7
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6099..6617)
DNA (519bp) protein (173aa)
Flp pilus assembly protein CpaB n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F497_9RHIZ
Flp pilus assembly protein CpaB {ECO:0000313|EMBL:EHS52418.1}; Flags: Precursor;; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
cpaB; pilus assembly protein; K02279 pilus assembly protein CpaB
SCNpilot_expt_1000_bf_scaffold_1951_curated_8
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7009..7515)
DNA (507bp) protein (169aa)
cpaA; prepilin peptidase; K02278 prepilin peptidase CpaA [EC:3.4.23.43]
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI000366B620
Flp pilus assembly protein CpaA {ECO:0000313|EMBL:GAJ94379.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
SCNpilot_expt_1000_bf_scaffold_1951_curated_9
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7660..7839)
DNA (180bp) protein (60aa)
PilA pilus assembly protein n=1 Tax=Rhizobium mongolense RepID=UPI0003B3F9E4
Flp/Fap pilin component protein {ECO:0000313|EMBL:AJD39597.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
pilA; component of type IV pilus, pilin subunit protein; K02651 pilus assembly protein Flp/PilA
SCNpilot_expt_1000_bf_scaffold_1951_curated_10
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8231..8635
DNA (405bp) protein (135aa)
Pilus subunit transmembrane protein n=1 Tax=Rhizobium sp. Pop5 RepID=K0VT64_9RHIZ
Pilus subunit transmembrane protein {ECO:0000313|EMBL:EJZ21971.1}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
pilQ; pilus subunit transmembrane protein
SCNpilot_expt_1000_bf_scaffold_1951_curated_11
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8743..9378
DNA (636bp) protein (212aa)
Transmembrane protein n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2Q9L4_9RHIZ
Transmembrane protein {ECO:0000313|EMBL:EKF60589.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
transmembrane protein
SCNpilot_expt_1000_bf_scaffold_1951_curated_12
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9378..9983
DNA (606bp) protein (202aa)
membrane protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00037B2910
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACS58708.1}; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
SCNpilot_expt_1000_bf_scaffold_1951_curated_13
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10084..11304
DNA (1221bp) protein (407aa)
Phosphopentomutase {ECO:0000256|HAMAP-Rule:MF_00740, ECO:0000256|SAAS:SAAS00010015}; EC=5.4.2.7 {ECO:0000256|HAMAP-Rule:MF_00740, ECO:0000256|SAAS:SAAS00009998};; Phosphodeoxyribomutase {ECO:0000256|HAMAP-Rule:MF_00740}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
phosphopentomutase (EC:5.4.2.7); K01839 phosphopentomutase [EC:5.4.2.7]
Phosphopentomutase n=1 Tax=Rhizobium freirei PRF 81 RepID=N6USB4_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1951_curated_14
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11301..12269
DNA (969bp) protein (323aa)
Adenine deaminase {ECO:0000256|HAMAP-Rule:MF_01962}; Short=ADE {ECO:0000256|HAMAP-Rule:MF_01962};; EC=3.5.4.2 {ECO:0000256|HAMAP-Rule:MF_01962};; Adenine aminohydrolase {ECO:0000256|HAMAP-Rule:MF_01962}; TaxID=754762 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2297.;"
adenosine deaminase (EC:3.5.4.4); K01488 adenosine deaminase [EC:3.5.4.4]
Adenosine deaminase n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2297 RepID=J0KWD8_RHILT
SCNpilot_expt_1000_bf_scaffold_1951_curated_15
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12386..13078
DNA (693bp) protein (231aa)
Uracil phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084530}; EC=2.4.2.9 {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084480};; UMP pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_01218}; UPRTase {ECO:0000256|HAMAP-Rule:MF_01218}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
upp; uracil phosphoribosyltransferase (EC:2.4.2.9); K00761 uracil phosphoribosyltransferase [EC:2.4.2.9]
uracil phosphoribosyltransferase n=1 Tax=Rhizobium sp. JGI 0001005-K05 RepID=UPI0003742E6A
SCNpilot_expt_1000_bf_scaffold_1951_curated_16
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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13111..13623
DNA (513bp) protein (171aa)
Peptidase aspartic family protein n=1 Tax=Rhizobium etli bv. mimosae str. Mim1 RepID=S5RQP6_RHIET
hypothetical protein; K06985 aspartyl protease family protein
Hypothetical conserved protein {ECO:0000313|EMBL:ABC89019.1}; TaxID=347834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CFN 42 / ATCC 51251).;"
SCNpilot_expt_1000_bf_scaffold_1951_curated_17
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13612..14949)
DNA (1338bp) protein (446aa)
Thymidine phosphorylase {ECO:0000256|SAAS:SAAS00031984}; EC=2.4.2.4 {ECO:0000256|SAAS:SAAS00031985};; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
Thymidine phosphorylase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LG62_RHITR
deoA; thymidine phosphorylase
SCNpilot_expt_1000_bf_scaffold_1951_curated_18
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14955..15725)
DNA (771bp) protein (257aa)
Deoxyribose-phosphate aldolase {ECO:0000256|SAAS:SAAS00058202}; EC=4.1.2.4 {ECO:0000256|SAAS:SAAS00058202};; TaxID=754522 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2012.;"
deoC; deoxyribose-phosphate aldolase (EC:4.1.2.4); K01619 deoxyribose-phosphate aldolase [EC:4.1.2.4]
Deoxyribose-phosphate aldolase n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0KB87_RHILT
SCNpilot_expt_1000_bf_scaffold_1951_curated_19
unknown

Not on your lists

15782..15973
DNA (192bp) protein (64aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1951_curated_20
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15898..16686)
DNA (789bp) protein (263aa)
Purine nucleoside phosphorylase {ECO:0000256|PIRNR:PIRNR000477}; EC=2.4.2.1 {ECO:0000256|PIRNR:PIRNR000477};; Inosine-guanosine phosphorylase {ECO:0000256|PIRNR:PIRNR000477}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
purine nucleoside phosphorylase; K03783 purine-nucleoside phosphorylase [EC:2.4.2.1]
Purine nucleoside phosphorylase n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3I575_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1951_curated_21
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16683..17075)
DNA (393bp) protein (131aa)
cdd; cytidine deaminase; K01489 cytidine deaminase [EC:3.5.4.5]
Cytidine deaminase n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HMY7_9RHIZ
Cytidine deaminase {ECO:0000313|EMBL:GAJ94367.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
SCNpilot_expt_1000_bf_scaffold_1951_curated_22
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17079..18050)
DNA (972bp) protein (324aa)
Putative ABC-type transport system, permease component n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2297 RepID=J0CFF0_RHILT
Putative ABC-type transport system, permease component {ECO:0000313|EMBL:EJC82062.1}; Flags: Precursor;; TaxID=754762 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2297.;"
sugar ABC transporter; K02057 simple sugar transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1951_curated_23
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18055..19164)
DNA (1110bp) protein (370aa)
Sugar ABC transporter permease n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2PI74_9RHIZ
Sugar ABC transporter permease {ECO:0000313|EMBL:EKF60578.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
sugar/ribonucleotide ABC transporter transmembrane protein; K02057 simple sugar transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1951_curated_24
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19172..19339)
DNA (168bp) protein (56aa)
sugar ABC transporter; K02056 simple sugar transport system ATP-binding protein [EC:3.6.3.17]
Sugar ABC transporter n=2 Tax=Rhizobium/Agrobacterium group RepID=B9J6U9_AGRRK
Uncharacterized protein {ECO:0000313|EMBL:EJK79318.1}; Flags: Fragment;; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
SCNpilot_expt_1000_bf_scaffold_1951_curated_25
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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19579..20892
DNA (1314bp) protein (438aa)
Putative ABC transporter ATP-binding protein YufO n=1 Tax=Streptomyces afghaniensis 772 RepID=S4N248_9ACTO
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_expt_1000_bf_scaffold_1951_curated_26
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20849..21841)
DNA (993bp) protein (331aa)
membrane protein n=1 Tax=Rhizobium mongolense RepID=UPI0003B6A588
basic membrane lipoprotein; K07335 basic membrane protein A and related proteins
Putative ABC-type transport system, periplasmic component/surface lipoprotein {ECO:0000313|EMBL:EJB04698.1}; Flags: Precursor;; TaxID=754764 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM597.;"
SCNpilot_expt_1000_bf_scaffold_1951_curated_27
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22097..22414)
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LE72_RHITR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGB69668.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_1951_curated_28
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22853..23314)
DNA (462bp) protein (154aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. AP16 RepID=J2WMW3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJK83545.1}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1951_curated_29
Rhizobium sp. H41, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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23769..24554
DNA (786bp) protein (262aa)
integrase n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI00034A62D9
Integrase {ECO:0000313|EMBL:KGE81747.1}; TaxID=1510041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. H41.;"
putative phage integrase
SCNpilot_expt_1000_bf_scaffold_1951_curated_30
unknown

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comp(24706..24900)
DNA (195bp) protein (65aa)

This feature has no annotations

Displaying items 1-30 of 97 in total

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