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SCNpilot_expt_1000_bf_scaffold_560_curated_5

Organism: scnpilot_dereplicated_Rhizobiales_12

near complete RP 44 / 55 MC: 2 BSCG 46 / 51 MC: 5 ASCG 10 / 38 MC: 2
Location: comp(5822..6097)

Top 3 Functional Annotations

Value Algorithm Source
Bacterial nucleoid DNA-binding protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JD34_AGRRK similarity UNIREF
DB: UNIREF100
  • Identity: 85.7
  • Coverage: 91.0
  • Bit_score: 161
  • Evalue 5.20e-37
hrm; nucleoid DNA-binding protein; K03530 DNA-binding protein HU-beta similarity KEGG
DB: KEGG
  • Identity: 85.7
  • Coverage: 91.0
  • Bit_score: 161
  • Evalue 1.60e-37
Transcriptional regulator HU subunit alpha {ECO:0000313|EMBL:KEA07263.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 85.7
  • Coverage: 91.0
  • Bit_score: 161
  • Evalue 7.30e-37

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Taxonomy

Agrobacterium rhizogenes → Agrobacterium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 276
ATGAACAAGAGTGAACTGGTCGCTGCCGTTGCCGAAAAGTCCGGCCTGACGAAAACCGATGCTGCGTCCGCCATCGATGCCGTCTTCGAAGCGGTGGAAGCGGAGCTGAAGAAGGGCGGCGACGTGCGCCTGGCCGGCTTCGGCAATTTCTCGGTCAGCCACCGCGAGGCGTCGAAGGGCCGCAATCCCTCGACCGGCGCCGAGGTCGACATCCCTGCGCGCAACGTGCCCAAGTTCACCCCTGGCAAGGGCCTGAAGGATGCCGTCAATAGCTGA
PROTEIN sequence
Length: 92
MNKSELVAAVAEKSGLTKTDAASAIDAVFEAVEAELKKGGDVRLAGFGNFSVSHREASKGRNPSTGAEVDIPARNVPKFTPGKGLKDAVNS*