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SCNpilot_expt_1000_bf_scaffold_560_curated

Search features with annotation key words

Displaying items 1-30 of 96 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_560_curated_1
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..430)
DNA (429bp) protein (143aa)
RecF/RecN/SMC familyt protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LH80_RHITR
RecF/RecN/SMC familyt protein
RecF/RecN/SMC familyt protein {ECO:0000313|EMBL:AGB70763.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_560_curated_2
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(998..2233)
DNA (1236bp) protein (412aa)
Serine/threonine-specific protein phosphatase protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JD37_AGRRK
serine/threonine-specific protein phosphatase
Serine/threonine-specific protein phosphatase protein {ECO:0000313|EMBL:ACM26174.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_expt_1000_bf_scaffold_560_curated_3
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2374..3360
DNA (987bp) protein (329aa)
Oxidoreductase protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JD36_AGRRK
oxidoreductase
Putative oxidoreductase, aryl-alcohol dehydrogenase like protein {ECO:0000313|EMBL:EJK85521.1}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
SCNpilot_expt_1000_bf_scaffold_560_curated_4
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3438..5636)
DNA (2199bp) protein (733aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens (strain C58 / ATCC 33970) RepID=Q7CZM5_AGRT5
Uncharacterized protein {ECO:0000313|EMBL:CDN91123.1}; Flags: Precursor;; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_560_curated_5
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5822..6097)
DNA (276bp) protein (92aa)
Bacterial nucleoid DNA-binding protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JD34_AGRRK
hrm; nucleoid DNA-binding protein; K03530 DNA-binding protein HU-beta
Transcriptional regulator HU subunit alpha {ECO:0000313|EMBL:KEA07263.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
SCNpilot_expt_1000_bf_scaffold_560_curated_6
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6385..8802)
DNA (2418bp) protein (806aa)
Lon protease {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174}; EC=3.4.21.53 {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174};; ATP-dependent protease La {ECO:0000256|HAMAP-Rule:MF_01973}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
lon; ATP-dependent protease La (EC:3.4.21.53)
Lon protease n=1 Tax=Rhizobium sp. CF122 RepID=J2IHY3_9RHIZ
SCNpilot_expt_1000_bf_scaffold_560_curated_7
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9149..10423)
DNA (1275bp) protein (425aa)
ATP-dependent Clp protease ATP-binding subunit ClpX n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2QBP6_9RHIZ
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000256|HAMAP-Rule:MF_00175, ECO:0000256|SAAS:SAAS00063387}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
clpX; ATP-dependent Clp protease, ATP-binding subunit ClpX
SCNpilot_expt_1000_bf_scaffold_560_curated_8
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10732..11361)
DNA (630bp) protein (210aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU000549};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
clpP; ATP-dependent Clp protease proteolytic subunit (EC:3.4.21.92); K01358 ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
ATP-dependent Clp protease proteolytic subunit n=2 Tax=Rhizobium RepID=J2J3F9_9RHIZ
SCNpilot_expt_1000_bf_scaffold_560_curated_9
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11747..13003
DNA (1257bp) protein (419aa)
Diguanylate cyclase n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0PMQ4_9RHIZ
Diguanylate cyclase {ECO:0000313|EMBL:CCM75198.1}; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
Diguanylate cyclase (GGDEF) domain-containing protein
SCNpilot_expt_1000_bf_scaffold_560_curated_10
Streptomyces sp. Tu6071, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12835..13812)
DNA (978bp) protein (326aa)
Putative cytochrome P-450 hydroxylase n=1 Tax=Streptomyces sp. Tu6071 RepID=F3Z7V2_9ACTO
Putative cytochrome P-450 hydroxylase {ECO:0000313|EMBL:EGJ73539.1}; TaxID=355249 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. Tu6071.;"
SCNpilot_expt_1000_bf_scaffold_560_curated_11
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14019..14285
DNA (267bp) protein (89aa)
cytochrome P450 n=1 Tax=Rhizobium sp. JGI 0001005-K05 RepID=UPI0003637618
Cytochrome P450 {ECO:0000313|EMBL:EJJ27897.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
cytochrome P450 hydroxylase
SCNpilot_expt_1000_bf_scaffold_560_curated_12
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14734..16017)
DNA (1284bp) protein (428aa)
O-acetylhomoserine aminocarboxypropyltransferase protein (EC:2.5.1.49)
O-acetylhomoserine/O-acetylserine sulfhydrylase n=1 Tax=Rhizobium sp. RepID=L0NDT0_RHISP
O-acetylhomoserine sulfhydrylase {ECO:0000313|EMBL:AHK43995.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
SCNpilot_expt_1000_bf_scaffold_560_curated_13
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16175..16603)
DNA (429bp) protein (143aa)
CoA-binding protein domain protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6U6L0_9RHIZ
CoA-binding protein {ECO:0000313|EMBL:KGD99329.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
putative CoA-binding protein
SCNpilot_expt_1000_bf_scaffold_560_curated_14
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16695..17021
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4FAZ4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EHS50009.1}; Flags: Precursor;; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_560_curated_15
unknown

Not on your lists

comp(17428..17547)
DNA (120bp) protein (40aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_560_curated_16
unknown

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comp(17818..17907)
DNA (90bp) protein (30aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_560_curated_17
unknown

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18269..18835
DNA (567bp) protein (189aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_560_curated_18
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


19187..19651
DNA (465bp) protein (155aa)
50S ribosomal protein L13 n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=RL13_SINMW
rplM; 50S ribosomal protein L13; K02871 large subunit ribosomal protein L13
50S ribosomal protein L13 {ECO:0000255|HAMAP-Rule:MF_01366}; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
SCNpilot_expt_1000_bf_scaffold_560_curated_19
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


19654..20118
DNA (465bp) protein (155aa)
30S ribosomal protein S9 n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2QBN0_9RHIZ
30S ribosomal protein S9 {ECO:0000256|HAMAP-Rule:MF_00532, ECO:0000256|RuleBase:RU003816}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
rpsI; 30S ribosomal protein S9; K02996 small subunit ribosomal protein S9
SCNpilot_expt_1000_bf_scaffold_560_curated_20
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20255..21205
DNA (951bp) protein (317aa)
Agmatinase {ECO:0000313|EMBL:EMS97913.1}; EC=3.5.3.11 {ECO:0000313|EMBL:EMS97913.1};; TaxID=1281779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens str. Cherry 2E-2-2.;"
speB; agmatinase; K01480 agmatinase [EC:3.5.3.11] rbh
Agmatinase n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8AIG5_RHIRD
SCNpilot_expt_1000_bf_scaffold_560_curated_21
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21275..22207
DNA (933bp) protein (311aa)
N-acetyl-gamma-glutamyl-phosphate reductase {ECO:0000256|HAMAP-Rule:MF_01110, ECO:0000256|SAAS:SAAS00015955}; Short=AGPR {ECO:0000256|HAMAP-Rule:MF_01110};; EC=1.2.1.38 {ECO:0000256|HAMAP-Rule:MF_01110, ECO:0000256|SAAS:SAAS00015955};; N-acetyl-glutamate semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01110}; TaxID=754762 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2297.;"
argC; N-acetyl-gamma-glutamyl-phosphate reductase (EC:1.2.1.38); K00145 N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
N-acetyl-gamma-glutamyl-phosphate reductase n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2297 RepID=J0CH76_RHILT
SCNpilot_expt_1000_bf_scaffold_560_curated_22
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22207..23040
DNA (834bp) protein (278aa)
Streptomycin 3''-kinase Str n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D3V5_9RHIZ
Streptomycin phosphotransferase {ECO:0000313|EMBL:CDN47345.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
strB; streptomycin resistance protein rbh
SCNpilot_expt_1000_bf_scaffold_560_curated_23
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23059..24141)
DNA (1083bp) protein (361aa)
Heme A synthase {ECO:0000256|HAMAP-Rule:MF_01665}; Short=HAS {ECO:0000256|HAMAP-Rule:MF_01665};; EC=1.3.-.- {ECO:0000256|HAMAP-Rule:MF_01665};; Cytochrome aa3-controlling protein {ECO:0000256|HAMAP-Rule:MF_01665}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
heme A synthase n=1 Tax=Rhizobium leguminosarum RepID=UPI0003667C3C
cytochrome oxidase assembly; K02259 cytochrome c oxidase assembly protein subunit 15
SCNpilot_expt_1000_bf_scaffold_560_curated_24
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24272..24484
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. RepID=L0NF64_RHISP
Uncharacterized protein {ECO:0000313|EMBL:CCF18962.1}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_560_curated_25
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24604..25830
DNA (1227bp) protein (409aa)
Uncharacterized protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9JVB4_AGRVS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM36194.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCNpilot_expt_1000_bf_scaffold_560_curated_26
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25797..27950)
DNA (2154bp) protein (718aa)
Polysaccharide synthesis/transport transmembrane protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JD09_AGRRK
Succinoglycan biosynthesis transport protein ExoP {ECO:0000313|EMBL:EYR81347.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
polysaccharide synthesis/transport transmembrane protein
SCNpilot_expt_1000_bf_scaffold_560_curated_27
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28131..28706
DNA (576bp) protein (192aa)
Polysaccharide export system protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JD08_AGRRK
polysaccharide export system protein; K01991 polysaccharide export outer membrane protein
Periplasmic protein involved in polysaccharide export {ECO:0000313|EMBL:EJK85550.1}; Flags: Precursor;; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
SCNpilot_expt_1000_bf_scaffold_560_curated_28
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28713..29867
DNA (1155bp) protein (385aa)
Glycosyltransferase n=1 Tax=Rhizobium sp. CF080 RepID=J2IN88_9RHIZ
Glycosyltransferase, family 1 {ECO:0000313|EMBL:CDN47338.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
putative glycosyltransferase protein
SCNpilot_expt_1000_bf_scaffold_560_curated_29
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30003..31568
DNA (1566bp) protein (522aa)
Predicted glycosyl transferase n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3MA20_RHISN
UDP-phosphate glucose phosphotransferase {ECO:0000313|EMBL:KDP70959.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
glycosyl transferase
SCNpilot_expt_1000_bf_scaffold_560_curated_30
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31565..32812
DNA (1248bp) protein (416aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F1X7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EHS53314.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
hypothetical protein
Displaying items 1-30 of 96 in total

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