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SCNpilot_expt_1000_bf_scaffold_2645_curated_18

Organism: scnpilot_dereplicated_Rhizobiales_12

near complete RP 44 / 55 MC: 2 BSCG 46 / 51 MC: 5 ASCG 10 / 38 MC: 2
Location: comp(15782..15991)

Top 3 Functional Annotations

Value Algorithm Source
Cold shock protein CspA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CGF1_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 87.0
  • Coverage: 69.0
  • Bit_score: 128
  • Evalue 2.80e-27
Cold shock protein {ECO:0000313|EMBL:EYR82908.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 87.0
  • Coverage: 69.0
  • Bit_score: 128
  • Evalue 4.00e-27
cspC2; cold-shock protein CspC similarity KEGG
DB: KEGG
  • Identity: 84.1
  • Coverage: 69.0
  • Bit_score: 126
  • Evalue 4.40e-27

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 210
ATGAATTCAGGTACAGTCAAGTGGTTCAATGACACCAAGGGTTTCGGCTTCATCGCTCCCGACGATGGTGCGACCGACGTCTTCGTCCACATCTCGGCGGTCGAACGCTCCGGCCTGCGCTCTCTCGCGGAAGGCCAGAAGGTGAGCTACGACATCGTCCAGGATCGCAAGTCGGGCAAAAGCTCGGCAGACAATCTGCGCGCTGTGTGA
PROTEIN sequence
Length: 70
MNSGTVKWFNDTKGFGFIAPDDGATDVFVHISAVERSGLRSLAEGQKVSYDIVQDRKSGKSSADNLRAV*