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SCNpilot_expt_1000_bf_scaffold_2645_curated

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2645_curated_1
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

473..1690
DNA (1218bp) protein (406aa)
Plasmid partitioning protein RepA n=1 Tax=Phyllobacterium sp. YR531 RepID=J3CHX0_9RHIZ
Putative replication protein A {ECO:0000313|EMBL:CDM61150.1}; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
cobyrinic acid a,c-diamide synthase
SCNpilot_expt_1000_bf_scaffold_2645_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1687..2697
DNA (1011bp) protein (337aa)
Putative replication protein B n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CSI9_9RHIZ
Plasmid partitioning protein RepB {ECO:0000313|EMBL:EYR79586.1}; Putative replication protein B {ECO:0000313|EMBL:EYR79589.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
repB; replication protein B
SCNpilot_expt_1000_bf_scaffold_2645_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2859..4073
DNA (1215bp) protein (405aa)
Putative replication protein C n=1 Tax=Shinella zoogloeoides DD12 RepID=V5BX63_9RHIZ
Replication protein C {ECO:0000313|EMBL:EYR77636.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
repc3; putative replication protein C
SCNpilot_expt_1000_bf_scaffold_2645_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4094..4474)
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CCL5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR77637.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_2645_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4471..5025)
DNA (555bp) protein (185aa)
Putative ParA-like protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CLZ3_9RHIZ
ATPases involved in chromosome partitioning {ECO:0000313|EMBL:EYR77638.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_2645_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5502..5972
DNA (471bp) protein (157aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C7I0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR82070.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_2645_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6361..8541
DNA (2181bp) protein (727aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CSI5_9RHIZ
Relaxase {ECO:0000313|EMBL:EYR77640.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2645_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8550..8834)
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CLU3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR77641.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2645_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9177..9479
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CH01_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR77642.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2645_curated_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9480..9893
DNA (414bp) protein (138aa)
Transcriptional regulator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EEV2_9RHIZ
Putative transcriptional regulator {ECO:0000313|EMBL:EYR77643.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
exsI; transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2645_curated_11
Xanthomonas campestris, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10077..11078
DNA (1002bp) protein (334aa)
Oxidoreductase n=1 Tax=Xanthomonas campestris pv. raphani 756C RepID=G0CAD4_XANCA
oxidoreductase
Oxidoreductase {ECO:0000313|EMBL:AEL06769.1}; TaxID=990315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris pv. raphani 756C.;"
SCNpilot_expt_1000_bf_scaffold_2645_curated_12
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11542..12621
DNA (1080bp) protein (360aa)
non-specific serine/threonine protein kinase (EC:2.7.11.1); K08482 circadian clock protein KaiC
circadian clock protein KaiC n=1 Tax=Rhizobium sp. JGI 0001005-K05 RepID=UPI0003751A5D
RecA-superfamily ATPase possibly involved in signal transduction {ECO:0000313|EMBL:EJJ29085.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
SCNpilot_expt_1000_bf_scaffold_2645_curated_13
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12591..13040
DNA (450bp) protein (150aa)
RecA-superfamily ATPase possibly involved in signal transduction n=1 Tax=Rhizobium sp. CF142 RepID=J2AZT6_9RHIZ
RecA-superfamily ATPase possibly involved in signal transduction {ECO:0000313|EMBL:EJJ29085.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
hypothetical protein; K08482 circadian clock protein KaiC
SCNpilot_expt_1000_bf_scaffold_2645_curated_14
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(13801..14475)
DNA (675bp) protein (225aa)
Tax=RBG_16_Gemmatimonadetes_66_8_curated
SCNpilot_expt_1000_bf_scaffold_2645_curated_15
Agrobacterium sp. H13-3, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14848..15039
DNA (192bp) protein (64aa)
two component sensor kinase/response regulator hybrid (EC:2.7.3.-)
chemotaxis protein CheY n=1 Tax=Agrobacterium sp. 10MFCol1.1 RepID=UPI000380BD25
Two component sensor kinase/response regulator hybrid {ECO:0000313|EMBL:ADY68226.1}; TaxID=861208 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. (strain H13-3) (Rhizobium lupini (strain H13-3)).;"
SCNpilot_expt_1000_bf_scaffold_2645_curated_16
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15070..15321)
DNA (252bp) protein (84aa)
Ribosomal protein S21 n=1 Tax=uncultured organism RepID=T1W9Y9_9ZZZZ
30S ribosomal protein S21 {ECO:0000256|HAMAP-Rule:MF_00358}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
30S ribosomal protein S21
SCNpilot_expt_1000_bf_scaffold_2645_curated_17
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15362..15649)
DNA (288bp) protein (96aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF080 RepID=J3B9U1_9RHIZ
Putative cold shock protein {ECO:0000313|EMBL:CDN56696.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
cold shock protein
SCNpilot_expt_1000_bf_scaffold_2645_curated_18
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15782..15991)
DNA (210bp) protein (70aa)
Cold shock protein CspA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CGF1_9RHIZ
Cold shock protein {ECO:0000313|EMBL:EYR82908.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
cspC2; cold-shock protein CspC
SCNpilot_expt_1000_bf_scaffold_2645_curated_19
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16443..16826
DNA (384bp) protein (128aa)
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM597 RepID=I9XEI9_RHILT
response regulator receiver protein
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain {ECO:0000313|EMBL:EJB07526.1}; TaxID=754764 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM597.;"
SCNpilot_expt_1000_bf_scaffold_2645_curated_20
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16888..17970)
DNA (1083bp) protein (361aa)
phaZ1; poly(3-hydroxyalkanoate) depolymerase C (EC:3.1.1.-)
Poly(3-hydroxyalkanoate) depolymerase C {ECO:0000313|EMBL:AFL50252.1}; EC=3.1.1.- {ECO:0000313|EMBL:AFL50252.1};; TaxID=1185652 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium fredii USDA 257.;"
Poly(3-hydroxyalkanoate) depolymerase C n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3X2Z6_RHIFR
SCNpilot_expt_1000_bf_scaffold_2645_curated_21
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18084..19142)
DNA (1059bp) protein (353aa)
Fatty acid desaturase Des {ECO:0000313|EMBL:EYR82639.1}; EC=1.14.19.- {ECO:0000313|EMBL:EYR82639.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
fatty acid desaturase; K10255 omega-6 fatty acid desaturase (delta-12 desaturase) [EC:1.14.19.-]
Fatty acid desaturase Des n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CYR5_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2645_curated_22
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19139..19411)
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF142 RepID=J1SZG7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJJ24741.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
SCNpilot_expt_1000_bf_scaffold_2645_curated_23
Agrobacterium arsenijevicii, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19469..19768)
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8B894_RHIRD
Uncharacterized protein {ECO:0000313|EMBL:KJF71588.1}; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. KFB 330.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2645_curated_24
unknown

Not on your lists

21249..21383
DNA (135bp) protein (45aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2645_curated_25
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21714..22877)
DNA (1164bp) protein (388aa)
Integrase/recombinase XerD n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CM93_9RHIZ
Integrase/recombinase xerD {ECO:0000313|EMBL:EYR81582.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative phage integrase
SCNpilot_expt_1000_bf_scaffold_2645_curated_26
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22954..23907
DNA (954bp) protein (318aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C6G4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR79818.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2645_curated_27
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23997..24602
DNA (606bp) protein (202aa)
Uncharacterized protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K511_AGRVS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM39959.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCNpilot_expt_1000_bf_scaffold_2645_curated_28
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24728..25699
DNA (972bp) protein (324aa)
Orf_Bo099 n=1 Tax=Rhizobium radiobacter RepID=A5WY19_RHIRD
Orf_Bo099 {ECO:0000313|EMBL:AAZ50487.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2645_curated_29
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25686..25979
DNA (294bp) protein (98aa)
Orf_Bo100 n=1 Tax=Rhizobium radiobacter RepID=A5WY20_RHIRD
Orf_Bo100 {ECO:0000313|EMBL:AAZ50488.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
SCNpilot_expt_1000_bf_scaffold_2645_curated_30
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25927..27159
DNA (1233bp) protein (411aa)
Orf_Bo101 n=1 Tax=Rhizobium radiobacter RepID=A5WY21_RHIRD
Orf_Bo101 {ECO:0000313|EMBL:AAZ50489.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
hypothetical protein
Displaying items 1-30 of 32 in total

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