ggKbase home page

SCNpilot_expt_1000_bf_scaffold_1689_curated_5

Organism: scnpilot_dereplicated_Rhizobiales_12

near complete RP 44 / 55 MC: 2 BSCG 46 / 51 MC: 5 ASCG 10 / 38 MC: 2
Location: comp(2808..3812)

Top 3 Functional Annotations

Value Algorithm Source
Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CLJ1_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 94.3
  • Coverage: 334.0
  • Bit_score: 618
  • Evalue 3.30e-174
ABC-type sugar transport system periplasmic component {ECO:0000313|EMBL:EYR78600.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 94.3
  • Coverage: 334.0
  • Bit_score: 618
  • Evalue 4.60e-174
periplasmic binding protein/LacI transcriptional regulator; K02058 simple sugar transport system substrate-binding protein similarity KEGG
DB: KEGG
  • Identity: 87.3
  • Coverage: 330.0
  • Bit_score: 562
  • Evalue 8.80e-158

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1005
ATGACCGACGATATCCGATCCGGCGTCAATCGCCGCAATCTCCTGAAGCTCACCGCCGTCGCGGGCGTTGTGGCAGGAACCGGGCTGCTCTCGGCCCATGCCGCAGCAGCCGAGGACGGCCTCTCTCTTAAGGGCAAGCGCATCGGCATCAGCACTGCCGGCACGGATCATTTTTTCGATCTCCAGGCCTACAACGCCCAGATCGAAGAGGTGAAGCGCCTCGGCGGCGAGCCGATCGCCGTCGATGCCGGCCGCAACGACGGCAAGCTCGTGTCCCAGCTCCAGACGCTGATCGCCCAGAAGCCCGATGCCATCGTCCAGCTTCTCGGTACGCTCAGCGTCATCGACCCGTGGCTGAAAAAGGCGCGTGAGGCTGATATCCCGGTCTTCACCATCGATGTCGGCTCGGTCAACTCGATCAACAACTCGACCTCGGACAATTGGGGCATCGGCAAGGACCTCGCCCTTCAACTCGTTTCCGATATCGGCGGCGAGGGCAATATCGTCGTGTTCAACGGCTTCTACGGCGTGACGCCCTGCGCCATCCGCTATGACCAGCTGGTCAATGTGGGGAAATATTTCCAGAAGGTTCAGATCGTGCAGCCGGAGCTGCGCGACGTGATTCCGAACACCGTCCAGGATGCGTTCACGCAAATTACCGCCATTCTCGCGAAATATCCGGAAAAGGGGTCGATCAAGGCGATCTGGTCCGCATGGGACATTCCGCAGCTCGGCGCAACGCAGGCGCTTGCCGCCGCCGGCCGCACGGAGATCCGGACCTATGGTGTCGATGGCAGCCCGGAAGTGCTCCAGCTCGTCGCCGATCCGAACTCGCCGGCCGCCGCCGACGTCGCCCAGCAGCCCGCCGAACTGGGCCGCGTCGCCATCCGCAACGTCGCCCGTCACCTTGCCGGCGAAACGCTGCCGCGCGAAACTTATGTGCCCGCGCTGCTCGCCAACAAGCAGAACGTCGGCGAGATCTCCAAGAAGCTCGGCATCGGCTGA
PROTEIN sequence
Length: 335
MTDDIRSGVNRRNLLKLTAVAGVVAGTGLLSAHAAAAEDGLSLKGKRIGISTAGTDHFFDLQAYNAQIEEVKRLGGEPIAVDAGRNDGKLVSQLQTLIAQKPDAIVQLLGTLSVIDPWLKKAREADIPVFTIDVGSVNSINNSTSDNWGIGKDLALQLVSDIGGEGNIVVFNGFYGVTPCAIRYDQLVNVGKYFQKVQIVQPELRDVIPNTVQDAFTQITAILAKYPEKGSIKAIWSAWDIPQLGATQALAAAGRTEIRTYGVDGSPEVLQLVADPNSPAAADVAQQPAELGRVAIRNVARHLAGETLPRETYVPALLANKQNVGEISKKLGIG*