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SCNpilot_expt_1000_bf_scaffold_1689_curated

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1689_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..177)
DNA (177bp) protein (59aa)
Permease component of ribose/xylose/arabinose/galactoside ABC-type transporter n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CHS0_9RHIZ
Ribose/xylose/arabinose/galactoside ABC-type transport system permease component {ECO:0000313|EMBL:EYR82497.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_1689_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(179..1258)
DNA (1080bp) protein (360aa)
Inner-membrane translocator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EYG3_9RHIZ
Ribose/xylose/arabinose/galactoside ABC-type transport system permease component {ECO:0000313|EMBL:EYR82496.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
sugar ABC transporter; K02057 simple sugar transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1689_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1218..1379)
DNA (162bp) protein (54aa)
Ribose import ATP-binding protein RbsA {ECO:0000313|EMBL:EYR82495.1}; EC=3.6.3.17 {ECO:0000313|EMBL:EYR82495.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
sugar ABC transporter; K02056 simple sugar transport system ATP-binding protein [EC:3.6.3.17]
Ribose import ATP-binding protein RbsA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D280_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1689_curated_4
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1636..2766
DNA (1131bp) protein (377aa)
Mll4969 protein n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98CW9_RHILO
hypothetical protein
Mll4969 protein {ECO:0000313|EMBL:BAB51502.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
SCNpilot_expt_1000_bf_scaffold_1689_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2808..3812)
DNA (1005bp) protein (335aa)
Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CLJ1_9RHIZ
ABC-type sugar transport system periplasmic component {ECO:0000313|EMBL:EYR78600.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
periplasmic binding protein/LacI transcriptional regulator; K02058 simple sugar transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_1689_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4295..5560)
DNA (1266bp) protein (422aa)
AcyL-CoA dehydrogenase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D6Z1_9RHIZ
AcyL-CoA dehydrogenase {ECO:0000313|EMBL:EYR78597.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
acyl-CoA dehydrogenase type 2
SCNpilot_expt_1000_bf_scaffold_1689_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5631..6443)
DNA (813bp) protein (271aa)
Putative D-methionine-binding lipoprotein MetQ n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D2G5_9RHIZ
Lipoprotein {ECO:0000256|PIRNR:PIRNR002854}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative ABC transporter substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_1689_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6463..7122)
DNA (660bp) protein (220aa)
Putative D-methionine transport system permease protein MetI n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EYL8_9RHIZ
Putative D-methionine transport system permease protein MetI {ECO:0000313|EMBL:EYR78595.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
D-methionine ABC transporter permease
SCNpilot_expt_1000_bf_scaffold_1689_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7112..8161)
DNA (1050bp) protein (350aa)
Methionine import ATP-binding protein MetN {ECO:0000256|HAMAP-Rule:MF_01719}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01719};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Methionine import ATP-binding protein MetN n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CI05_9RHIZ
metN; DL-methionine transporter ATP-binding subunit; K02071 D-methionine transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_1689_curated_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8167..9399)
DNA (1233bp) protein (411aa)
FMNH2-dependent monooxygenase protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CY54_9RHIZ
FMNH2-dependent monooxygenase protein {ECO:0000313|EMBL:EYR78593.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
FMNH2-dependent monooxygenase
SCNpilot_expt_1000_bf_scaffold_1689_curated_11
unknown

Not on your lists

9747..9917
DNA (171bp) protein (57aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1689_curated_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10189..11358
DNA (1170bp) protein (390aa)
Alkanesulfonate monooxygenase {ECO:0000256|SAAS:SAAS00023380}; EC=1.14.14.5 {ECO:0000256|SAAS:SAAS00023380};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
alkanesulfonate monooxygenase (EC:1.14.14.5); K04091 alkanesulfonate monooxygenase [EC:1.14.14.5]
Alkanesulfonate monooxygenase SsuD n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EYG7_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1689_curated_13
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11496..12845
DNA (1350bp) protein (450aa)
monooxygenase n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI00035DADB2
FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family {ECO:0000313|EMBL:EJN02128.1}; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
putative xenobiotic (desulfurization)monooxygenase subunit A, NtaA/SnaA/SoxA/DszA family
SCNpilot_expt_1000_bf_scaffold_1689_curated_14
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12872..13840
DNA (969bp) protein (323aa)
Glycine betaine/proline ABC transporter, periplasmic substrate-binding protein n=1 Tax=Silicibacter lacuscaerulensis ITI-1157 RepID=D0CV73_9RHOB
Glycine betaine/proline ABC transporter, periplasmic substrate-binding protein {ECO:0000313|EMBL:CDX36413.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
proX; glycine betaine-binding periplasmic protein
SCNpilot_expt_1000_bf_scaffold_1689_curated_15
Roseovarius sp. TM1035, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13844..14692
DNA (849bp) protein (283aa)
opuAA; glycine betaine/proline ABC transporter, ATP-binding protein (EC:3.6.3.32); K02000 glycine betaine/proline transport system ATP-binding protein [EC:3.6.3.32]
Glycine betaine/proline ABC transporter, ATP-binding protein n=1 Tax=Roseovarius sp. TM1035 RepID=A6E5Z1_9RHOB
Glycine betaine/proline ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EDM29867.1}; TaxID=391613 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" source="Roseovarius sp. TM1035.;"
SCNpilot_expt_1000_bf_scaffold_1689_curated_16
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14689..16182
DNA (1494bp) protein (498aa)
L-proline glycine betaine ABC transport system permease protein ProW n=1 Tax=Loktanella cinnabarina LL-001 RepID=U2Z7N9_9RHOB
Putative Glycine betaine/proline ABC transporter, permease protein {ECO:0000313|EMBL:CDX36419.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
binding-protein-dependent transport system inner membrane protein; K02001 glycine betaine/proline transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1689_curated_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16379..17710)
DNA (1332bp) protein (444aa)
hypothetical protein n=1 Tax=Rhizobium sp. JGI 0001005-H05 RepID=UPI00035FEE6D
Putative NAD/FAD-binding protein {ECO:0000313|EMBL:EYR77966.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
amine oxidase
SCNpilot_expt_1000_bf_scaffold_1689_curated_18
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17845..18483
DNA (639bp) protein (213aa)
hypothetical protein n=1 Tax=Rhizobium sp. JGI 0001005-H05 RepID=UPI000366BED4
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
DNA-directed RNA polymerase sigma subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_expt_1000_bf_scaffold_1689_curated_19
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18480..19133
DNA (654bp) protein (218aa)
Anti-sigma-E factor ChrR n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EH08_9RHIZ
Anti-sigma-E factor ChrR {ECO:0000313|EMBL:EYR77964.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
transcriptional regulator; K07167 putative transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1689_curated_20
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19137..19952
DNA (816bp) protein (272aa)
hypothetical protein n=1 Tax=Rhizobium sp. JGI 0001005-H05 RepID=UPI0003614913
Uncharacterized protein {ECO:0000313|EMBL:EYR77963.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1689_curated_21
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20989..21264
DNA (276bp) protein (92aa)
hypothetical protein n=1 Tax=Rhizobium sp. JGI 0001005-H05 RepID=UPI000382CB73
Uncharacterized protein {ECO:0000313|EMBL:EYR77961.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
Displaying 21 items

View Taxonomy