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SCNpilot_expt_1000_bf_scaffold_1689_curated_18

Organism: scnpilot_dereplicated_Rhizobiales_12

near complete RP 44 / 55 MC: 2 BSCG 46 / 51 MC: 5 ASCG 10 / 38 MC: 2
Location: 17845..18483

Top 3 Functional Annotations

Value Algorithm Source
hypothetical protein n=1 Tax=Rhizobium sp. JGI 0001005-H05 RepID=UPI000366BED4 similarity UNIREF
DB: UNIREF100
  • Identity: 78.3
  • Coverage: 212.0
  • Bit_score: 336
  • Evalue 2.70e-89
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 83.5
  • Coverage: 212.0
  • Bit_score: 348
  • Evalue 5.70e-93
DNA-directed RNA polymerase sigma subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 46.6
  • Coverage: 232.0
  • Bit_score: 195
  • Evalue 2.40e-47

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 639
ATGAATGAAGTTTCGAGCCCCGTTGAGAGCGACAGGAAACCCGGCGTCAAGGCGGGCCGGCGGCTTGCCGTGGTGAGTTCGATGGATACAGGACAGGCGCCTTCGCCCGACGCGCTGGTCGAGATGATGGCGCAGGTCGCGCAACGCCGGGACCGGCAGGCCTTCGCCCTGCTCTTCCGGTATTTCGGGCCTAGGCTGAAGACATTTTTCCTGCGCTGGACGCCGTCCTCGGCCGCGGCGGAGGATCTGGTGCAGGAAACGATGCTGACCGTCTGGCGCAAGGCGTCCTATTTCGATGCCGGGCGCGCCGGCGTCGCGACCTGGATCTTCACGATCGCGCGCAACATCCGCATCGACCACCTGCGGCGACAGCGCGATCCCTTGTCACTTCAACCGGAACCGGACATCGCCCCGGAGACGGTCGAGGACGGCGTGCTCGGCGCGGAACGGGACGCACGTGTGCGCAGCGCGCTGACGGCGCTCTCGCCCGAGCAGCAGACGATCATCCGTCTCTCCTATTTCAGCGAGAAATCGCAGACCGAAATCGCCGATGAGCTGGGAATCCCGCTCGGCACCGTAAAATCTAGAACACGCCTGGCCATGAACCGCCTGCGCGCGCTGCTGGAAGAAAGATCATGA
PROTEIN sequence
Length: 213
MNEVSSPVESDRKPGVKAGRRLAVVSSMDTGQAPSPDALVEMMAQVAQRRDRQAFALLFRYFGPRLKTFFLRWTPSSAAAEDLVQETMLTVWRKASYFDAGRAGVATWIFTIARNIRIDHLRRQRDPLSLQPEPDIAPETVEDGVLGAERDARVRSALTALSPEQQTIIRLSYFSEKSQTEIADELGIPLGTVKSRTRLAMNRLRALLEERS*