ggKbase home page

SCNpilot_cont_500_bf_scaffold_396_curated

Search features with annotation key words

Displaying items 1-30 of 111 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_396_curated_1
Marinobacter sp. ELB17, Marinobacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..1704)
DNA (1704bp) protein (568aa)
Sulfite reductase [NADPH] hemoprotein beta-component {ECO:0000256|HAMAP-Rule:MF_01540}; Short=SiR-HP {ECO:0000256|HAMAP-Rule:MF_01540};; Short=SiRHP {ECO:0000256|HAMAP-Rule:MF_01540};; EC=1.8.1.2 {ECO:0000256|HAMAP-Rule:MF_01540};; TaxID=270374 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacter.;" source="Marinobacter sp. ELB17.;"
sulfite reductase subunit beta; K00381 sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2]
sulfite reductase n=1 Tax=Marinobacter lipolyticus RepID=UPI000378AB89
SCNpilot_cont_500_bf_scaffold_396_curated_2
Marinobacter sp. ELB17, Marinobacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1738..3477)
DNA (1740bp) protein (580aa)
flavodoxin/nitric oxide synthase; K00380 sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2]
flavodoxin n=1 Tax=Marinobacter lipolyticus RepID=UPI0003628F2A
YvgR {ECO:0000313|EMBL:EAZ97796.1}; TaxID=270374 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacter.;" source="Marinobacter sp. ELB17.;"
SCNpilot_cont_500_bf_scaffold_396_curated_3
R_Betaproteobacteria_62_17, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3966..6263
DNA (2298bp) protein (766aa)
aldehyde oxidase/xanthine dehydrogenase; K03520 carbon-monoxide dehydrogenase large subunit [EC:1.2.99.2]
Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein n=1 Tax=Rhizobium sp. CF080 RepID=J3CU44_9RHIZ
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_62_17_curated
SCNpilot_cont_500_bf_scaffold_396_curated_4
Hyphomonas jannaschiana, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6395..6832
DNA (438bp) protein (146aa)
hypothetical protein n=1 Tax=Teredinibacter turnerae RepID=UPI00037E6ACE
Uncharacterized protein {ECO:0000313|EMBL:KCZ89744.1}; TaxID=1280952 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas jannaschiana VP2.;"
Glycosyltransferase
SCNpilot_cont_500_bf_scaffold_396_curated_5
GWB1_Spirochaetes_59_5_curated, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

6829..7539
DNA (711bp) protein (237aa)
DNA modification methylase; K07319 putative adenine-specific DNA-methyltransferase [EC:2.1.1.72]
DNA modification methylase id=3373218 bin=GWB1_Spirochaetes_59_5 species=Elusimicrobium minutum genus=Elusimicrobium taxon_order=Elusimicrobiales taxon_class=Elusimicrobia phylum=Elusimicrobia tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes
Tax=GWB1_Spirochaetes_59_5_curated
SCNpilot_cont_500_bf_scaffold_396_curated_6
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7536..8783
DNA (1248bp) protein (416aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NYG3_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS35362.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_396_curated_7
unknown

Not on your lists

comp(8818..9141)
DNA (324bp) protein (108aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_396_curated_8
unknown

Not on your lists

comp(9141..9458)
DNA (318bp) protein (106aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_396_curated_9
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9516..10979
DNA (1464bp) protein (488aa)
Conjugal transfer protein TraG n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SCL3_9RHIZ
Conjugal transfer protein TraG {ECO:0000313|EMBL:AHB47709.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
TRAG family protein; K03205 type IV secretion system protein VirD4
SCNpilot_cont_500_bf_scaffold_396_curated_10
unknown

Not on your lists

11224..11523
DNA (300bp) protein (100aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_396_curated_11
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11474..12100)
DNA (627bp) protein (209aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P3R0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS35364.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
integrase family protein
SCNpilot_cont_500_bf_scaffold_396_curated_12
unknown

Not on your lists

12598..12963
DNA (366bp) protein (122aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_396_curated_13
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13001..13816
DNA (816bp) protein (272aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P1P7_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS35366.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
SCNpilot_cont_500_bf_scaffold_396_curated_14
unknown

Not on your lists

comp(13875..15248)
DNA (1374bp) protein (458aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_396_curated_15
Caldithrix abyssi, Caldithrix, Bacteria

Not on your lists

comp(15250..17343)
DNA (2094bp) protein (698aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=880073 species="Bacteria; Caldithrix.;" source="Caldithrix abyssi DSM 13497.;"
Histidine kinase n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XUR9_9BACT
ATP binding/ATPase (HATPase c) domain-containing protein
SCNpilot_cont_500_bf_scaffold_396_curated_16
Micavibrio aeruginosavorus, Micavibrio, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17347..18297)
DNA (951bp) protein (317aa)
Site-specific DNA methylase n=1 Tax=Micavibrio aeruginosavorus EPB RepID=M4VX91_9PROT
Site-specific DNA methylase
Site-specific DNA methylase {ECO:0000313|EMBL:AGH97819.1}; TaxID=349215 species="Bacteria; Proteobacteria; Alphaproteobacteria; Micavibrio.;" source="Micavibrio aeruginosavorus EPB.;"
SCNpilot_cont_500_bf_scaffold_396_curated_17
Micavibrio aeruginosavorus, Micavibrio, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18773..19933
DNA (1161bp) protein (387aa)
Uncharacterized protein n=1 Tax=Micavibrio aeruginosavorus EPB RepID=M4VF15_9PROT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGH97818.1}; TaxID=349215 species="Bacteria; Proteobacteria; Alphaproteobacteria; Micavibrio.;" source="Micavibrio aeruginosavorus EPB.;"
SCNpilot_cont_500_bf_scaffold_396_curated_18
Klebsiella pneumoniae, Klebsiella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19976..20668)
DNA (693bp) protein (231aa)
Type II restriction enzyme n=1 Tax=Leptospirillum rubarum RepID=A3EW32_9BACT
Type-2 restriction enzyme PaeR7I {ECO:0000313|EMBL:EWD79797.1}; TaxID=1400171 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Klebsiella.;" source="Klebsiella pneumoniae UCI 18.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_396_curated_19
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20706..22439)
DNA (1734bp) protein (578aa)
Putative modification methylase n=1 Tax=Leptospirillum rubarum RepID=A3EW33_9BACT
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
SCNpilot_cont_500_bf_scaffold_396_curated_20
unknown

Not on your lists

23311..23493
DNA (183bp) protein (61aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_396_curated_21
Nitrosomonas sp. AL212, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24089..25945
DNA (1857bp) protein (619aa)
Recombinase n=1 Tax=Nitrosomonas sp. AL212 RepID=F9ZH50_9PROT
recombinase
Recombinase {ECO:0000313|EMBL:ADZ27270.1}; TaxID=153948 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas sp. AL212.;"
SCNpilot_cont_500_bf_scaffold_396_curated_trna_3
unknown

Not on your lists

comp(25905..25977)
DNA (73bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_396_curated_22
unknown

Not on your lists

26118..26978
DNA (861bp) protein (287aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_396_curated_23
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27039..27809)
DNA (771bp) protein (257aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P785_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS36619.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
putative transglycosylase
SCNpilot_cont_500_bf_scaffold_396_curated_24
Methylobacterium radiotolerans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28126..28554
DNA (429bp) protein (143aa)
hypothetical protein n=1 Tax=Methylobacterium sp. 77 RepID=UPI0003799C45
type IV pilus assembly PilZ
Type IV pilus assembly PilZ {ECO:0000313|EMBL:ACB25727.1}; TaxID=426355 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM; 2831).;"
SCNpilot_cont_500_bf_scaffold_396_curated_25
bacterium YEK0313, Bacteria

Not on your lists

comp(28680..29066)
DNA (387bp) protein (129aa)
thioesterase superfamily protein; K10806 acyl-CoA thioesterase YciA [EC:3.1.2.-]
acyl-CoA hydrolase n=1 Tax=Methylobacterium sp. 77 RepID=UPI000375A46F
Putative acyl-CoA thioester hydrolase {ECO:0000313|EMBL:CEJ14133.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
SCNpilot_cont_500_bf_scaffold_396_curated_26
unknown

Not on your lists

comp(29094..29468)
DNA (375bp) protein (125aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_396_curated_27
Burkholderia pseudomallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30090..30830)
DNA (741bp) protein (247aa)
hypothetical protein n=1 Tax=zeta proteobacterium SCGC AB-133-C04 RepID=UPI0003687E7D
Uncharacterized protein {ECO:0000313|EMBL:KGS03850.1}; TaxID=1434929 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia pseudomallei ABCPW 111.;"
SCNpilot_cont_500_bf_scaffold_396_curated_28
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30937..31185
DNA (249bp) protein (83aa)
Bsr7348 protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89DU0_BRADU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAR58979.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
SCNpilot_cont_500_bf_scaffold_396_curated_29
Hoeflea sp. IMCC20628, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31396..31845)
DNA (450bp) protein (150aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D2E31A
Uncharacterized protein {ECO:0000313|EMBL:AKI01681.1}; TaxID=1620421 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. IMCC20628.;"
hypothetical protein
Displaying items 1-30 of 111 in total

View Taxonomy