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SCNpilot_cont_500_bf_scaffold_351_curated

Search features with annotation key words

Displaying items 1-30 of 91 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_351_curated_1
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(289..3804)
DNA (3516bp) protein (1172aa)
Sensor histidine kinase n=1 Tax=Rhodovulum sp. PH10 RepID=J9A1L2_9RHOB
Sensor histidine kinase {ECO:0000313|EMBL:EJW09635.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
multi-sensor hybrid histidine kinase
SCNpilot_cont_500_bf_scaffold_351_curated_2
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4039..5148
DNA (1110bp) protein (370aa)
Membrane protein AbrB duplication n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PEA8_9BRAD
Membrane protein {ECO:0000313|EMBL:ETR77129.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
hypothetical protein; K07120
SCNpilot_cont_500_bf_scaffold_351_curated_3
Bradyrhizobium sp. ORS 375, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5172..6404)
DNA (1233bp) protein (411aa)
5-aminolevulinate synthase {ECO:0000256|RuleBase:RU910713}; EC=2.3.1.37 {ECO:0000256|RuleBase:RU910713};; 5-aminolevulinic acid synthase {ECO:0000256|RuleBase:RU910713}; Delta-ALA synthase {ECO:0000256|RuleBase:RU910713}; Delta-aminolevulinate synthase {ECO:0000256|RuleBase:RU910713}; TaxID=566679 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 375.;"
hemA; 5-aminolevulinate synthase (EC:2.3.1.37); K00643 5-aminolevulinate synthase [EC:2.3.1.37]
5-aminolevulinate synthase n=1 Tax=Bradyrhizobium sp. ORS 375 RepID=H0SQE3_9BRAD
SCNpilot_cont_500_bf_scaffold_351_curated_4
RBG_16_Chloroflexi_52_11_curated, Chloroflexi, Bacteria

Not on your lists

comp(6526..7113)
DNA (588bp) protein (196aa)
NUDIX hydrolase n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI0003486F56
NUDIX hydrolase
Tax=RBG_16_Chloroflexi_52_11_curated
SCNpilot_cont_500_bf_scaffold_351_curated_5
Caenispirillum salinarum, Caenispirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7147..8415)
DNA (1269bp) protein (423aa)
Uncharacterized protein n=1 Tax=Caenispirillum salinarum AK4 RepID=K9H5Y7_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EKV26048.1}; TaxID=1238182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Caenispirillum.;" source="Caenispirillum salinarum AK4.;"
methyltransferase family protein
SCNpilot_cont_500_bf_scaffold_351_curated_6
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8437..9420)
DNA (984bp) protein (328aa)
Nucleoside-diphosphate-sugar epimerase; K01784 UDP-glucose 4-epimerase [EC:5.1.3.2]
Nucleoside-diphosphate-sugar epimerase n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7ZG63_AZOL4
Nucleoside-diphosphate-sugar epimerase {ECO:0000313|EMBL:CBS90770.1}; TaxID=862719 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
SCNpilot_cont_500_bf_scaffold_351_curated_7
Aphanocapsa montana, Aphanocapsa, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(9417..10508)
DNA (1092bp) protein (364aa)
hypothetical protein n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI0003B5444C
Oxidoreductase {ECO:0000313|EMBL:KIF20474.1}; TaxID=1574475 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Aphanocapsa.;" source="Aphanocapsa montana BDHKU210001.;"
oxidoreductase
SCNpilot_cont_500_bf_scaffold_351_curated_8
unknown

Not on your lists

10618..12735
DNA (2118bp) protein (706aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_351_curated_9
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12817..13224
DNA (408bp) protein (136aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI00037673C9
transmembrane protein
Uncharacterized protein {ECO:0000313|EMBL:EFI51444.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
SCNpilot_cont_500_bf_scaffold_351_curated_10
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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13312..14628
DNA (1317bp) protein (439aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5EIK6_BRASB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ36000.1}; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
SCNpilot_cont_500_bf_scaffold_351_curated_11
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14634..15443
DNA (810bp) protein (270aa)
hypothetical protein n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI00034AFDA1
hypothetical protein; K09701 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ35999.1}; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
SCNpilot_cont_500_bf_scaffold_351_curated_12
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15488..16714
DNA (1227bp) protein (409aa)
cyclopropane-fatty-acyl-phospholipid synthase (EC:2.1.1.79); K00574 cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
Cyclopropane-fatty-acyl-phospholipid synthase n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q137E4_RHOPS
Cyclopropane-fatty-acyl-phospholipid synthase {ECO:0000313|EMBL:KIZ39034.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
SCNpilot_cont_500_bf_scaffold_351_curated_13
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16869..17597
DNA (729bp) protein (243aa)
Transcriptional regulator, Crp/Fnr family n=2 Tax=Rhodopseudomonas palustris RepID=B3QGX6_RHOPT
Crp/Fnr family transcriptional regulator
Probable transcriptional regulator, Crp/Fnr family {ECO:0000313|EMBL:CAE26435.1}; TaxID=258594 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009).;"
SCNpilot_cont_500_bf_scaffold_351_curated_14
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17712..18995
DNA (1284bp) protein (428aa)
hypothetical protein n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI0003B2E211
hypothetical protein
Monooxygenase FAD-binding {ECO:0000313|EMBL:ACF02604.1}; TaxID=395960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain TIE-1).;"
SCNpilot_cont_500_bf_scaffold_351_curated_15
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19014..19469)
DNA (456bp) protein (152aa)
Deaminase n=1 Tax=Pseudomonas aeruginosa BL05 RepID=U9JGI0_PSEAI
deaminase
Probable deaminase {ECO:0000313|EMBL:AAG05887.1}; TaxID=208964 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG; 12228).;"
SCNpilot_cont_500_bf_scaffold_351_curated_16
bacterium YEK0313, Bacteria

Not on your lists

comp(19517..19786)
DNA (270bp) protein (90aa)
SirA family protein; K04085 tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
tRNA 5-methylaminomethyl-2-thiouridine synthase TusA n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RDA4_9RHIZ
Sulfurtransferase TusA {ECO:0000313|EMBL:CEJ13957.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
SCNpilot_cont_500_bf_scaffold_351_curated_17
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19869..20969)
DNA (1101bp) protein (367aa)
Transglutaminase domain protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2Y0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CEG07212.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
transglutaminase
SCNpilot_cont_500_bf_scaffold_351_curated_18
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20971..21711)
DNA (741bp) protein (247aa)
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2X9_9BRAD
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen {ECO:0000313|EMBL:EFI52309.1}; Flags: Precursor;; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
thioredoxin family protein
SCNpilot_cont_500_bf_scaffold_351_curated_19
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21957..22556
DNA (600bp) protein (200aa)
fdoG; formate dehydrogenase-O major subunit FdoG (EC:1.2.1.2)
Molybdopterin oxidoreductase Fe4S4 region n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2X8_9BRAD
Formate dehydrogenase-O major subunit {ECO:0000313|EMBL:CEG07214.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
SCNpilot_cont_500_bf_scaffold_351_curated_20
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22605..25034
DNA (2430bp) protein (810aa)
fdoG; formate dehydrogenase-O major subunit FdoG (EC:1.2.1.2)
Formate dehydrogenase, alpha subunit n=1 Tax=Afipia felis ATCC 53690 RepID=K8NLK8_AFIFE
Formate dehydrogenase, alpha subunit {ECO:0000313|EMBL:EKS31207.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
SCNpilot_cont_500_bf_scaffold_351_curated_21
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25050..25988
DNA (939bp) protein (313aa)
Formate dehydrogenase, beta subunit n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2X6_9BRAD
Formate dehydrogenase, beta subunit {ECO:0000313|EMBL:EFI52306.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
fdoH; formate dehydrogenase-O iron-sulfur subunit FdoH; K00124 formate dehydrogenase, beta subunit
SCNpilot_cont_500_bf_scaffold_351_curated_22
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25985..26659
DNA (675bp) protein (225aa)
Formate dehydrogenase, gamma subunit n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7ID19_XANP2
formate dehydrogenase subunit gamma; K00127 formate dehydrogenase, gamma subunit
Formate dehydrogenase, gamma subunit {ECO:0000313|EMBL:ABS65912.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCNpilot_cont_500_bf_scaffold_351_curated_23
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26776..27693
DNA (918bp) protein (306aa)
Protein FdhE homolog n=1 Tax=Afipia felis ATCC 53690 RepID=K8NUU7_AFIFE
Protein FdhE homolog {ECO:0000256|HAMAP-Rule:MF_00611}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
fdhE; formate dehydrogenase accessory protein FdhE; K02380 FdhE protein
SCNpilot_cont_500_bf_scaffold_351_curated_24
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27704..29113
DNA (1410bp) protein (470aa)
L-seryl-tRNA(Sec) selenium transferase {ECO:0000256|HAMAP-Rule:MF_00423, ECO:0000256|SAAS:SAAS00029253}; EC=2.9.1.1 {ECO:0000256|HAMAP-Rule:MF_00423, ECO:0000256|SAAS:SAAS00029254};; Selenocysteine synthase {ECO:0000256|HAMAP-Rule:MF_00423}; Selenocysteinyl-tRNA(Sec) synthase {ECO:0000256|HAMAP-Rule:MF_00423}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
selA; L-seryl-tRNA selenium transferase SelA (EC:2.9.1.1); K01042 L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
L-seryl-tRNA(Sec) selenium transferase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2X3_9BRAD
SCNpilot_cont_500_bf_scaffold_351_curated_25
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29113..29907
DNA (795bp) protein (265aa)
Sel1-like repeat protein n=3 Tax=Oligotropha carboxidovorans RepID=F8BMH0_OLICM
Putative beta-lactamase HcpC {ECO:0000313|EMBL:CEG07220.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
Sel1-like repeat-containing protein; K07126
SCNpilot_cont_500_bf_scaffold_351_curated_26
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29904..32003
DNA (2100bp) protein (700aa)
Selenocysteine-specific translation elongation factor n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2X1_9BRAD
Selenocysteine-specific translation elongation factor {ECO:0000313|EMBL:EFI52301.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
selB; selenocysteine-specific translation elongation factor; K03833 selenocysteine-specific elongation factor
SCNpilot_cont_500_bf_scaffold_351_curated_trna_1
unknown

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31872..31963
DNA (92bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_351_curated_27
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32000..32491
DNA (492bp) protein (164aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2X0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CEG07221.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_351_curated_28
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32619..32927
DNA (309bp) protein (103aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2W9_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EFI52299.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_351_curated_29
bacterium YEK0313, Bacteria

Not on your lists

32924..33697
DNA (774bp) protein (258aa)
Biotin/lipoate A/B protein ligase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AJD5_9PROT
Octanoyltransferase LipM {ECO:0000313|EMBL:CEJ13945.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
biotin/lipoate A/B protein ligase
Displaying items 1-30 of 91 in total

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