ggKbase home page

SCNpilot_cont_500_bf_scaffold_523_curated

Search features with annotation key words

Displaying items 1-30 of 61 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_523_curated_1
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(621..2654)
DNA (2034bp) protein (678aa)
Methylmalonyl-CoA mutase n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8HUY6_AZOC5
methylmalonyl-CoA mutase; K14447 (2R)-ethylmalonyl-CoA mutase
Methylmalonyl-CoA mutase {ECO:0000313|EMBL:BAF86990.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCNpilot_cont_500_bf_scaffold_523_curated_2
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2693..3913)
DNA (1221bp) protein (407aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TYV5_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCE11643.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_523_curated_3
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4044..5318
DNA (1275bp) protein (425aa)
crotonyl-CoA reductase; K14446 crotonyl-CoA carboxylase/reductase [EC:1.3.1.85]
Crotonyl-CoA reductase n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IEK1_XANP2
Crotonyl-CoA reductase {ECO:0000313|EMBL:ABS66444.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCNpilot_cont_500_bf_scaffold_523_curated_4
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5322..6275)
DNA (954bp) protein (318aa)
ribonuclease BN n=1 Tax=Xanthobacteraceae RepID=UPI00036945F9
ribonuclease BN; K07058 membrane protein
Ribonuclease BN {ECO:0000313|EMBL:ADH90718.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCNpilot_cont_500_bf_scaffold_523_curated_5
bacterium YEK0313, Bacteria

Not on your lists

comp(6363..8357)
DNA (1995bp) protein (665aa)
hypothetical protein n=1 Tax=Pannonibacter phragmitetus RepID=UPI00037E61A6
Methyl-accepting chemotaxis protein 4 {ECO:0000313|EMBL:CEJ10756.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
Chemotaxis sensory transducer
SCNpilot_cont_500_bf_scaffold_523_curated_6
bacterium YEK0313, Bacteria

Not on your lists

8558..10225
DNA (1668bp) protein (556aa)
Putative Methylsuccinyl-CoA dehydrogenase n=1 Tax=Rhodovulum sp. PH10 RepID=J6UHA6_9RHOB
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:CEJ10758.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
acyl-CoA dehydrogenase domain-containing protein; K14448 (2S)-methylsuccinyl-CoA dehydrogenase
SCNpilot_cont_500_bf_scaffold_523_curated_7
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10343..10789
DNA (447bp) protein (149aa)
Host attachment protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A9F9_STAND
host attachment protein
Host attachment protein {ECO:0000313|EMBL:ADH90721.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCNpilot_cont_500_bf_scaffold_523_curated_8
Bradyrhizobium sp. ORS 285, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10852..11745
DNA (894bp) protein (298aa)
Putative ABC transporter, periplasmic amino acid-binding protein n=1 Tax=Bradyrhizobium sp. ORS 285 RepID=H0S6R8_9BRAD
Putative ABC transporter, periplasmic amino acid-binding protein {ECO:0000313|EMBL:CCD89895.1}; TaxID=115808 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 285.;"
ABC transporter periplasmic amino acid-binding protein; K02030 polar amino acid transport system substrate-binding protein
SCNpilot_cont_500_bf_scaffold_523_curated_9
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11759..13387
DNA (1629bp) protein (543aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00177}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00177};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00177}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
lysK; lysyl-tRNA synthetase (EC:6.1.1.6); K04566 lysyl-tRNA synthetase, class I [EC:6.1.1.6]
Lysine--tRNA ligase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HGX2_9BRAD
SCNpilot_cont_500_bf_scaffold_523_curated_10
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13460..14026)
DNA (567bp) protein (189aa)
Uncharacterized protein n=2 Tax=Oligotropha carboxidovorans RepID=F8BI01_OLICM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI07954.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_cont_500_bf_scaffold_523_curated_11
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14147..14788)
DNA (642bp) protein (214aa)
Peptidase S24 n=1 Tax=Rhodovulum sp. PH10 RepID=J6UF66_9RHOB
Peptidase S24 {ECO:0000313|EMBL:EJW12321.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
putative phage repressor
SCNpilot_cont_500_bf_scaffold_523_curated_12
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14972..16069
DNA (1098bp) protein (366aa)
Dihydroorotate dehydrogenase (quinone) {ECO:0000256|SAAS:SAAS00084821}; EC=1.3.5.2 {ECO:0000256|SAAS:SAAS00084821};; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
dihydroorotate dehydrogenase 2; K00226 dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1]
Dihydroorotate dehydrogenase (quinone) n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QIN6_9BRAD
SCNpilot_cont_500_bf_scaffold_523_curated_13
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16066..17409)
DNA (1344bp) protein (448aa)
MATE efflux family protein n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q21BB2_RHOPB
MATE efflux family protein; K03327 multidrug resistance protein, MATE family
MATE efflux family protein {ECO:0000313|EMBL:ABD86324.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_cont_500_bf_scaffold_523_curated_14
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17390..17665)
DNA (276bp) protein (92aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002EBE121
Uncharacterized protein {ECO:0000313|EMBL:ETR77227.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_523_curated_15
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17725..19410)
DNA (1686bp) protein (562aa)
ATP-dependent DNA ligase; K01971 DNA ligase (ATP) [EC:6.5.1.1]
ATP dependent DNA ligase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V8I5_9BRAD
ATP dependent DNA ligase {ECO:0000313|EMBL:EFI50870.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
SCNpilot_cont_500_bf_scaffold_523_curated_16
Bradyrhizobium sp. ORS 375, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19407..20453)
DNA (1047bp) protein (349aa)
Putative metallo-hydrolase/oxidoreductase n=1 Tax=Bradyrhizobium sp. ORS 375 RepID=H0SAX4_9BRAD
Putative metallo-hydrolase/oxidoreductase {ECO:0000313|EMBL:CCD91351.1}; TaxID=566679 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 375.;"
putative metallo-hydrolase/oxidoreductase
SCNpilot_cont_500_bf_scaffold_523_curated_17
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20521..21447
DNA (927bp) protein (309aa)
Phosphonate transport system permease n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HGW4_9BRAD
Phosphonate transport system permease {ECO:0000313|EMBL:ERF83691.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
type 12 methyltransferase
SCNpilot_cont_500_bf_scaffold_523_curated_18
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21578..24112
DNA (2535bp) protein (845aa)
ATP dependent DNA helicase; K03724 ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.-]
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P0Z6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS33345.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
SCNpilot_cont_500_bf_scaffold_523_curated_19
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24109..24840
DNA (732bp) protein (244aa)
Metallophosphoesterase n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VBM3_RHOPX
metallophosphoesterase; K06953
Metallophosphoesterase {ECO:0000313|EMBL:ADU42595.1}; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
SCNpilot_cont_500_bf_scaffold_523_curated_20
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24853..25638)
DNA (786bp) protein (262aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TLZ4_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCE07482.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_523_curated_21
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25635..26561)
DNA (927bp) protein (309aa)
permease n=1 Tax=Mesorhizobium sp. WSM4349 RepID=UPI00038136C0
Bradyrhizobium elkanii strain UASWS1015 Contig181, whole genome shotgun sequence {ECO:0000313|EMBL:KIU46734.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
hypothetical protein; K07090 rbh
SCNpilot_cont_500_bf_scaffold_523_curated_22
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26851..30420)
DNA (3570bp) protein (1190aa)
hypothetical protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI0003828A16
Uncharacterized protein {ECO:0000313|EMBL:KIZ37435.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
hypothetical protein; K13582 localization factor PodJL rbh
SCNpilot_cont_500_bf_scaffold_523_curated_23
unknown

Not on your lists

comp(30748..31161)
DNA (414bp) protein (138aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_523_curated_24
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31386..32633)
DNA (1248bp) protein (416aa)
Major facilitator superfamily MFS_1 n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IBX1_METNO
Methylobacterium aquaticum DNA, complete genome, strain: MA-22A {ECO:0000313|EMBL:BAQ46629.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
major facilitator superfamily protein
SCNpilot_cont_500_bf_scaffold_523_curated_25
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32800..33960
DNA (1161bp) protein (387aa)
acyl-CoA dehydrogenase domain-containing protein (EC:1.3.99.13)
Acyl-CoA dehydrogenase n=1 Tax=Nitratireductor indicus C115 RepID=K2NYW8_9RHIZ
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:ETR77216.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
SCNpilot_cont_500_bf_scaffold_523_curated_26
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33986..34444
DNA (459bp) protein (153aa)
Uncharacterized protein n=1 Tax=Rhodovulum sp. PH10 RepID=J6LHC0_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EJW12308.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
cupin 2 domain-containing protein
SCNpilot_cont_500_bf_scaffold_523_curated_27
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34508..35122)
DNA (615bp) protein (205aa)
glutathione S-transferase domain-containing protein; K00799 glutathione S-transferase [EC:2.5.1.18]
Glutathione S-transferase domain n=1 Tax=Rhodopseudomonas palustris (strain TIE-1) RepID=B3QEG6_RHOPT
Glutathione S-transferase domain {ECO:0000313|EMBL:ACE99445.1}; TaxID=395960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain TIE-1).;"
SCNpilot_cont_500_bf_scaffold_523_curated_28
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35243..36367)
DNA (1125bp) protein (375aa)
exodeoxyribonuclease V; K01144 exodeoxyribonuclease V [EC:3.1.11.5]
Exodeoxyribonuclease V n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SV30_NITWN
Exodeoxyribonuclease V {ECO:0000313|EMBL:ABA03861.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCNpilot_cont_500_bf_scaffold_523_curated_29
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36691..38232
DNA (1542bp) protein (514aa)
Diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IFG7_9BRAD
Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:ERF81189.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_523_curated_30
Bradyrhizobium sp. YR681, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38353..39723
DNA (1371bp) protein (457aa)
gshA; putative glutathione synthetase; K01919 glutamate--cysteine ligase [EC:6.3.2.2]
Glutamate--cysteine ligase, plant type n=1 Tax=Bradyrhizobium sp. YR681 RepID=J2VX99_9BRAD
Glutamate--cysteine ligase, plant type {ECO:0000313|EMBL:EJN10907.1}; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. YR681.;"
Displaying items 1-30 of 61 in total

View Taxonomy