ggKbase home page

SCNpilot_cont_1000_bf_scaffold_222_curated

Search features with annotation key words

Displaying items 1-30 of 108 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_bf_scaffold_222_curated_1
unknown

Not on your lists

comp(2..97)
DNA (96bp) protein (32aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_222_curated_2
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(144..563)
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F9L1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCV13165.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_222_curated_3
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(586..1179)
DNA (594bp) protein (198aa)
Mlr8351 protein n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q983F5_RHILO
Uncharacterized protein {ECO:0000313|EMBL:CDX20865.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_222_curated_4
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1130..2827)
DNA (1698bp) protein (566aa)
Inosine-5'-monophosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928}; Short=IMP dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPD {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPDH {ECO:0000256|HAMAP-Rule:MF_01964};; EC=1.1.1.205 {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928};; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
inosine 5'-monophosphate dehydrogenase (EC:1.1.1.205); K00088 IMP dehydrogenase [EC:1.1.1.205] rbh
UPI0003CF5331 related cluster n=1 Tax=unknown RepID=UPI0003CF5331
SCNpilot_cont_1000_bf_scaffold_222_curated_5
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2957..4123)
DNA (1167bp) protein (389aa)
6-phosphofructokinase {ECO:0000313|EMBL:EKF17197.1}; EC=2.7.1.11 {ECO:0000313|EMBL:EKF17197.1};; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
6-phosphofructokinase (EC:2.7.1.11); K00850 6-phosphofructokinase [EC:2.7.1.11] rbh
6-phosphofructokinase n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MJ72_9RHIZ
SCNpilot_cont_1000_bf_scaffold_222_curated_6
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4769..7651
DNA (2883bp) protein (961aa)
Ribonucleoside-diphosphate reductase {ECO:0000256|RuleBase:RU003410}; EC=1.17.4.1 {ECO:0000256|RuleBase:RU003410};; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
ribonucleotide-diphosphate reductase subunit alpha; K00525 ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
ribonucleotide-diphosphate reductase subunit alpha n=1 Tax=Hoeflea sp. 108 RepID=UPI00035F4871
SCNpilot_cont_1000_bf_scaffold_222_curated_7
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7812..8930
DNA (1119bp) protein (373aa)
Ribonucleoside-diphosphate reductase subunit beta {ECO:0000256|PIRNR:PIRNR000355}; EC=1.17.4.1 {ECO:0000256|PIRNR:PIRNR000355};; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
nrdB; ribonucleoside-diphosphate reductase beta subunit NrdB (EC:1.17.4.1); K00526 ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
Ribonucleoside-diphosphate reductase subunit beta n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BXE4_9RHIZ
SCNpilot_cont_1000_bf_scaffold_222_curated_8
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9313..10575
DNA (1263bp) protein (421aa)
Rieske (2Fe-2S) protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000370F0F7
Rieske (2Fe-2S) iron-sulfur domain; K00479 Rieske 2Fe-2S family protein
Rieske (2Fe-2S) iron-sulfur domain {ECO:0000313|EMBL:ADV09571.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
SCNpilot_cont_1000_bf_scaffold_222_curated_9
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10586..11686
DNA (1101bp) protein (367aa)
Ferredoxin n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YA38_9RHIZ
Ferredoxin {ECO:0000313|EMBL:EHH11351.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
flavodoxin reductase family protein
SCNpilot_cont_1000_bf_scaffold_222_curated_10
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11683..11955
DNA (273bp) protein (91aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002F32E7A
Uncharacterized protein {ECO:0000313|EMBL:EZQ15565.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
SCNpilot_cont_1000_bf_scaffold_222_curated_11
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12092..14467)
DNA (2376bp) protein (792aa)
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00172, ECO:0000256|SAAS:SAAS00049969}; EC=2.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00172, ECO:0000256|SAAS:SAAS00050077};; Cobalamin-independent methionine synthase {ECO:0000256|HAMAP-Rule:MF_00172}; Methionine synthase, vitamin-B12 independent isozyme {ECO:0000256|HAMAP-Rule:MF_00172}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Meso
5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase (EC:2.1.1.14); K00549 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] rbh
UPI0003CDF37F related cluster n=1 Tax=unknown RepID=UPI0003CDF37F
SCNpilot_cont_1000_bf_scaffold_222_curated_12
Thermoanaerobacter ethanolicus, Thermoanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

15164..16870
DNA (1707bp) protein (569aa)
Mismatch repair ATPase (MutS family) n=2 Tax=Thermoanaerobacter RepID=I8QY94_9THEO
DNA mismatch repair protein MutS domain protein {ECO:0000313|EMBL:EGD52355.1}; TaxID=509192 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Thermoanaerobacter.;" source="Thermoanaerobacter ethanolicus JW 200.;"
DNA mismatch repair protein MutS domain-containing protein
SCNpilot_cont_1000_bf_scaffold_222_curated_13
Moorella glycerini, Moorella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

16867..18396
DNA (1530bp) protein (510aa)
DNA mismatch repair protein MutS domain protein n=1 Tax=Thermoanaerobacter wiegelii Rt8.B1 RepID=G2MTZ6_9THEO
Genome assembly strain_NMP_1 {ECO:0000313|EMBL:CEP68119.1}; TaxID=55779 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moorella group; Moorella.;" source="Moorella glycerini.;"
DNA mismatch repair protein MutS domain-containing protein
SCNpilot_cont_1000_bf_scaffold_222_curated_14
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18450..19214
DNA (765bp) protein (255aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0BBY5_9RHIZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGK59782.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCNpilot_cont_1000_bf_scaffold_222_curated_15
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19211..19417
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WRK9_9GAMM
Bradyrhizobium elkanii strain UASWS1015 Contig156, whole genome shotgun sequence {ECO:0000313|EMBL:KIU52659.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
SCNpilot_cont_1000_bf_scaffold_222_curated_16
Chthonomonas calidirosea, Chthonomonas, Chthonomonadales, Chthonomonadetes, Armatimonadetes, Bacteria

Not on your lists

19421..20638
DNA (1218bp) protein (406aa)
Arabinose efflux permease n=1 Tax=Chthonomonas calidirosea T49 RepID=S0ESQ5_9BACT
Arabinose efflux permease
Arabinose efflux permease {ECO:0000313|EMBL:CCW33985.1}; TaxID=1303518 species="Bacteria; Armatimonadetes; Chthonomonadetes; Chthonomonadales; Chthonomonadaceae; Chthonomonas.;" source="Chthonomonas calidirosea (strain DSM 23976 / ICMP 18418 / T49).;"
SCNpilot_cont_1000_bf_scaffold_222_curated_17
unknown

Not on your lists

21285..22007
DNA (723bp) protein (241aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_222_curated_18
unknown

Not on your lists

22017..22682
DNA (666bp) protein (222aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_222_curated_19
Burkholderia sp. TJI49, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22872..23819
DNA (948bp) protein (316aa)
Formate hydrogenlyase subunit 4-like protein n=1 Tax=Burkholderia sp. TJI49 RepID=F0FWR5_9BURK
Formate hydrogenlyase subunit 4-like protein {ECO:0000313|EMBL:EGD06345.1}; TaxID=987057 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. TJI49.;"
formate hydrogenlyase subunit 4-like protein
SCNpilot_cont_1000_bf_scaffold_222_curated_20
Burkholderia sp. TJI49, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23825..24505
DNA (681bp) protein (227aa)
hypothetical protein; K12140 hydrogenase-4 component E [EC:1.-.-.-]
Hydrogenase 4 membrane component (E) n=1 Tax=Burkholderia sp. TJI49 RepID=F0FWR4_9BURK
Hydrogenase 4 membrane component (E) {ECO:0000313|EMBL:EGD06344.1}; TaxID=987057 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. TJI49.;"
SCNpilot_cont_1000_bf_scaffold_222_curated_21
Burkholderia sp. TJI49, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24508..25977
DNA (1470bp) protein (490aa)
NADH dehydrogenase (quinone) (EC:1.6.99.5); K05903 NADH dehydrogenase (quinone) [EC:1.6.99.5]
NADH dehydrogenase (Quinone) n=1 Tax=Burkholderia sp. TJI49 RepID=F0FWR3_9BURK
NADH dehydrogenase (Quinone) {ECO:0000313|EMBL:EGD06343.1}; TaxID=987057 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. TJI49.;"
SCNpilot_cont_1000_bf_scaffold_222_curated_22
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25974..27518
DNA (1545bp) protein (515aa)
Putative NADH-ubiquinone oxidoreductase n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0J4H5_ACIMA
Formate hydrogenlyase subunit 5 {ECO:0000313|EMBL:KDM67333.1}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
putative NADH-ubiquinone oxidoreductase
SCNpilot_cont_1000_bf_scaffold_222_curated_23
Burkholderia sp. TJI49, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27528..28340
DNA (813bp) protein (271aa)
NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Acidiphilium sp. PM RepID=F7S200_9PROT
NADH ubiquinone oxidoreductase, 20 kDa subunit
NADH ubiquinone oxidoreductase, 20 kDa subunit {ECO:0000313|EMBL:EGD06341.1}; TaxID=987057 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. TJI49.;"
SCNpilot_cont_1000_bf_scaffold_222_curated_24
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28330..30324
DNA (1995bp) protein (665aa)
NADH/Ubiquinone/plastoquinone (Complex I) n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=A5FW48_ACICJ
NADH/ubiquinone/plastoquinone (complex I)
NADH/Ubiquinone/plastoquinone (Complex I) {ECO:0000313|EMBL:ABQ29830.1}; Flags: Precursor;; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
SCNpilot_cont_1000_bf_scaffold_222_curated_25
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30344..30718
DNA (375bp) protein (125aa)
Putative fluoride ion transporter CrcB n=3 Tax=Acidiphilium RepID=A5FV99_ACICJ
CrcB protein
Putative fluoride ion transporter CrcB {ECO:0000256|HAMAP-Rule:MF_00454}; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
SCNpilot_cont_1000_bf_scaffold_222_curated_26
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30729..31076
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CU10_THIA3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAZ88779.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
SCNpilot_cont_1000_bf_scaffold_222_curated_27
CG_Arma_01, Armatimonadetes, Bacteria

Not on your lists

31281..32558
DNA (1278bp) protein (426aa)
Enolase n=1 Tax=Desulfobacca acetoxidans (strain ATCC 700848 / DSM 11109 / ASRB2) RepID=F2NDZ5_DESAR
Tax=CG_Arma_01
SCNpilot_cont_1000_bf_scaffold_222_curated_28
GWF2_Bacteroidetes_35_48_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

32610..33683
DNA (1074bp) protein (358aa)
Hemolysin n=1 Tax=Rhodopirellula maiorica SM1 RepID=M5RD67_9PLAN
hemolysin
Tax=GWF2_Bacteroidetes_35_48_curated
SCNpilot_cont_1000_bf_scaffold_222_curated_29
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34582..35490
DNA (909bp) protein (303aa)
universal stress protein UspA n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI0003665167
Universal stress protein UspA-like protein {ECO:0000313|EMBL:EJL56474.1}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
universal stress UspA-like protein
SCNpilot_cont_1000_bf_scaffold_222_curated_30
Carboxydothermus hydrogenoformans, Carboxydothermus, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

35942..37732
DNA (1791bp) protein (597aa)
Putative uncharacterized protein n=1 Tax=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) RepID=Q3AAB0_CARHZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABB14654.1}; TaxID=246194 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Carboxydothermus.;" source="Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 /; Z-2901).;"
Displaying items 1-30 of 108 in total

View Taxonomy