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SCNpilot_cont_300_bf_scaffold_880_curated

Search features with annotation key words

Displaying items 1-30 of 59 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_880_curated_1
unknown

Not on your lists

1..198
DNA (198bp) protein (66aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_880_curated_2
Martelella endophytica, Martelella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

216..1709
DNA (1494bp) protein (498aa)
Uncharacterized protein {ECO:0000313|EMBL:AJY45050.1}; TaxID=1486262 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Martelella.;" source="Martelella endophytica.;"
Extracellular solute-binding protein, family 5 id=3040421 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Mesorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
family 5 extracellular solute-binding protein; K02035 peptide/nickel transport system substrate-binding protein
SCNpilot_cont_300_bf_scaffold_880_curated_3
Martelella endophytica, Martelella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1711..2625
DNA (915bp) protein (305aa)
Uncharacterized protein {ECO:0000313|EMBL:AJY45048.1}; TaxID=1486262 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Martelella.;" source="Martelella endophytica.;"
Dipeptide transport system permease DppB id=4526369 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
oligopeptide ABC transporter permease; K02033 peptide/nickel transport system permease protein
SCNpilot_cont_300_bf_scaffold_880_curated_4
Martelella endophytica, Martelella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2629..3573
DNA (945bp) protein (315aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6UJL4_SINMW
Uncharacterized protein {ECO:0000313|EMBL:AJY45047.1}; TaxID=1486262 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Martelella.;" source="Martelella endophytica.;"
binding-protein-dependent transport systems inner membrane component; K02034 peptide/nickel transport system permease protein
SCNpilot_cont_300_bf_scaffold_880_curated_5
bacterium YEK0313, Bacteria

Not on your lists

comp(3457..4383)
DNA (927bp) protein (309aa)
Putative transcriptional regulator n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MTL9_9BURK
HTH-type transcriptional regulator CynR {ECO:0000313|EMBL:CEJ13099.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
transcriptional regulator
SCNpilot_cont_300_bf_scaffold_880_curated_6
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4470..6743)
DNA (2274bp) protein (758aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D98458
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_880_curated_7
unknown

Not on your lists

comp(6952..7230)
DNA (279bp) protein (93aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_880_curated_8
unknown

Not on your lists

7603..7836
DNA (234bp) protein (78aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_880_curated_9
unknown

Not on your lists

comp(7934..8335)
DNA (402bp) protein (134aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_880_curated_10
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8436..9443)
DNA (1008bp) protein (336aa)
Oligopeptide/dipeptide ABC transporter, ATP-binding protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YR45_9RHIZ
Oligopeptide/dipeptide ABC transporter, ATP-binding-like protein {ECO:0000313|EMBL:KFC74763.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
oligopeptide ABC transporter; K02032 peptide/nickel transport system ATP-binding protein
SCNpilot_cont_300_bf_scaffold_880_curated_11
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9440..10420)
DNA (981bp) protein (327aa)
Oligopeptide/dipeptide ABC transporter, ATP-binding protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YR44_9RHIZ
Oligopeptide/dipeptide ABC transporter, ATP-binding protein {ECO:0000313|EMBL:KFC74762.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
oligopeptide ABC transporter; K02031 peptide/nickel transport system ATP-binding protein
SCNpilot_cont_300_bf_scaffold_880_curated_12
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10417..11976)
DNA (1560bp) protein (520aa)
Putative gamma-glutamyltranspeptidase {ECO:0000313|EMBL:KFC74761.1}; EC=2.3.2.2 {ECO:0000313|EMBL:KFC74761.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
ggt; gamma-glutamyltransferase; K00681 gamma-glutamyltranspeptidase [EC:2.3.2.2]
Gamma-glutamyltransferase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YR43_9RHIZ
SCNpilot_cont_300_bf_scaffold_880_curated_13
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11998..12783)
DNA (786bp) protein (262aa)
5-keto-D-gluconate-5-reductase {ECO:0000313|EMBL:KFC74759.1}; EC=1.1.1.69 {ECO:0000313|EMBL:KFC74759.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
Uncharacterized protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YR41_9RHIZ
oxidoreductase
SCNpilot_cont_300_bf_scaffold_880_curated_14
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12794..13642)
DNA (849bp) protein (283aa)
ABC-type dipeptide/oligopeptide/nickel transport system, permease component n=1 Tax=Microvirga sp. WSM3557 RepID=I4YR40_9RHIZ
Peptide transport system permease DppC {ECO:0000313|EMBL:KFC74758.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
dppCch1; dipeptide ABC transporter; K02034 peptide/nickel transport system permease protein
SCNpilot_cont_300_bf_scaffold_880_curated_15
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13639..14565)
DNA (927bp) protein (309aa)
ABC-type dipeptide/oligopeptide/nickel transport system, permease component n=1 Tax=Microvirga sp. WSM3557 RepID=I4YR39_9RHIZ
Inner membrane ABC transporter permease protein YddR {ECO:0000313|EMBL:KFC74757.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
peptide ABC transporter; K02033 peptide/nickel transport system permease protein
SCNpilot_cont_300_bf_scaffold_880_curated_16
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14578..16080)
DNA (1503bp) protein (501aa)
ABC-type dipeptide transport system, periplasmic component n=1 Tax=Microvirga sp. WSM3557 RepID=I4YR38_9RHIZ
ABC-type dipeptide transport system, periplasmic component {ECO:0000313|EMBL:EIM26430.1}; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
dipeptide ABC transporter; K02035 peptide/nickel transport system substrate-binding protein
SCNpilot_cont_300_bf_scaffold_880_curated_17
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16153..17658)
DNA (1506bp) protein (502aa)
ABC-type dipeptide transport system, periplasmic component n=1 Tax=Microvirga sp. WSM3557 RepID=I4YR38_9RHIZ
Oligopeptide ABC transporter substrate-binding protein {ECO:0000313|EMBL:KFC74756.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
dipeptide ABC transporter; K02035 peptide/nickel transport system substrate-binding protein
SCNpilot_cont_300_bf_scaffold_880_curated_18
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17655..18446)
DNA (792bp) protein (264aa)
Transcriptional regulator n=1 Tax=Microvirga sp. WSM3557 RepID=I4YR37_9RHIZ
Transcriptional regulator {ECO:0000313|EMBL:KFC74755.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
transcriptional regulator protein
SCNpilot_cont_300_bf_scaffold_880_curated_19
Hyphomonas sp. CY54-11-8, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18747..19721)
DNA (975bp) protein (325aa)
Cysteine protease, papain family n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0C1P8_HYPNA
Uncharacterized protein {ECO:0000313|EMBL:KCZ47503.1}; TaxID=1280944 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas sp. CY54-11-8.;"
cysteine protease
SCNpilot_cont_300_bf_scaffold_880_curated_20
Hyphomonas chukchiensis, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19740..21200)
DNA (1461bp) protein (487aa)
Protein kinase n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0C1P9_HYPNA
Uncharacterized protein {ECO:0000313|EMBL:KCZ54501.1}; TaxID=1280947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas chukchiensis.;"
SCNpilot_cont_300_bf_scaffold_880_curated_21
unknown

Not on your lists

21461..22564
DNA (1104bp) protein (368aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_880_curated_22
Hyphomonas sp. CY54-11-8, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22518..24260)
DNA (1743bp) protein (581aa)
Uncharacterized protein n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0C1Q1_HYPNA
Uncharacterized protein {ECO:0000313|EMBL:KCZ47500.1}; TaxID=1280944 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas sp. CY54-11-8.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_880_curated_23
unknown

Not on your lists

comp(24299..24814)
DNA (516bp) protein (172aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_880_curated_24
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25332..26291
DNA (960bp) protein (320aa)
lytic transglycosylase n=1 Tax=Methylobacterium sp. MB200 RepID=UPI000381DCD3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACK83426.1}; TaxID=440085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain CM4 / NCIMB 13688); (Methylobacterium chloromethanicum).;"
SCNpilot_cont_300_bf_scaffold_880_curated_25
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26288..27484
DNA (1197bp) protein (399aa)
Uncharacterized protein n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IKF7_METNO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACL61942.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
SCNpilot_cont_300_bf_scaffold_880_curated_26
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27509..28087)
DNA (579bp) protein (193aa)
Hpt domain protein n=1 Tax=Rhodovulum sp. PH10 RepID=J6UJ73_9RHOB
Hpt domain protein {ECO:0000313|EMBL:EJW13619.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_880_curated_27
bacterium YEK0313, Bacteria

Not on your lists

comp(28084..28662)
DNA (579bp) protein (193aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI0003791C00
Chemotaxis protein CheY {ECO:0000313|EMBL:CEJ12686.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
two-component response regulator
SCNpilot_cont_300_bf_scaffold_880_curated_28
bacterium YEK0313, Bacteria

Not on your lists

comp(28659..29228)
DNA (570bp) protein (190aa)
Chemotaxis protein CheYIII n=1 Tax=Rhodovulum sp. PH10 RepID=J6LLU1_9RHOB
Chemotaxis protein CheY {ECO:0000313|EMBL:CEJ12686.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
response regulator receiver protein
SCNpilot_cont_300_bf_scaffold_880_curated_29
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29341..30102)
DNA (762bp) protein (254aa)
NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037468}; EC=2.7.1.23 {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037533};; ATP-dependent NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
NAD(+) kinase (EC:2.7.1.23); K00858 NAD+ kinase [EC:2.7.1.23]
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI0003718E5B
SCNpilot_cont_300_bf_scaffold_880_curated_30
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30243..31217)
DNA (975bp) protein (325aa)
Zn-dependent hydrolase, glyoxylase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YW80_9RHIZ
Beta-lactamase {ECO:0000313|EMBL:KFG70290.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
beta-lactamase domain-containing protein
Displaying items 1-30 of 59 in total

View Taxonomy