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SCNpilot_cont_300_bf_scaffold_1398_curated

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1398_curated_1
Burkholderia pseudomallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(147..728)
DNA (582bp) protein (194aa)
Uncharacterized protein n=1 Tax=Prevotella pallens ATCC 700821 RepID=F9DL55_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KGW18140.1}; TaxID=1435370 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia pseudomallei MSHR4000.;"
SCNpilot_cont_300_bf_scaffold_1398_curated_2
Scytonema tolypothrichoides, Scytonema, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(725..1897)
DNA (1173bp) protein (391aa)
Putative Rhs family protein n=1 Tax=Xenorhabdus nematophila (strain ATCC 19061 / DSM 3370 / LMG 1036 / NCIB 9965 / AN6) RepID=D3V8V9_XENNA
Uncharacterized protein {ECO:0000313|EMBL:KIJ80157.1}; TaxID=1233231 species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema tolypothrichoides VB-61278.;"
Rhs family protein
SCNpilot_cont_300_bf_scaffold_1398_curated_3
Burkholderia pseudomallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2098..2388
DNA (291bp) protein (97aa)
Uncharacterized protein n=6 Tax=Burkholderia pseudomallei RepID=I1WN29_BURPE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KGW10973.1}; TaxID=1435370 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia pseudomallei MSHR4000.;"
SCNpilot_cont_300_bf_scaffold_1398_curated_4
Bradyrhizobium sp. YR681, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2472..2885)
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. YR681 RepID=J3I307_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EJN13453.1}; Flags: Precursor;; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. YR681.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1398_curated_5
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3210..4226
DNA (1017bp) protein (339aa)
hypothetical protein n=1 Tax=Hahella ganghwensis RepID=UPI0003825CF4
Uncharacterized protein {ECO:0000313|EMBL:KGF69470.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
transcriptional regulator
SCNpilot_cont_300_bf_scaffold_1398_curated_6
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4232..4762)
DNA (531bp) protein (177aa)
Cytochrome P450 family protein n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0BYG7_HYPNA
Cytochrome P450 family protein {ECO:0000313|EMBL:CDX54269.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
cytochrome P450 family protein
SCNpilot_cont_300_bf_scaffold_1398_curated_7
unknown

Not on your lists

comp(4814..4993)
DNA (180bp) protein (60aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1398_curated_8
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5035..5544)
DNA (510bp) protein (170aa)
Cytochrome P450 family protein n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0BYG7_HYPNA
Cytochrome P450 family protein {ECO:0000313|EMBL:CDX54269.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
cytochrome P450 family protein
SCNpilot_cont_300_bf_scaffold_1398_curated_9
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5567..5872)
DNA (306bp) protein (102aa)
Ferredoxin n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GB17_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:KGF69476.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
ferredoxin
SCNpilot_cont_300_bf_scaffold_1398_curated_10
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5903..6259)
DNA (357bp) protein (119aa)
pyridine nucleotide-disulfide oxidoreductase; K00529 ferredoxin--NAD+ reductase [EC:1.18.1.3]
Uncharacterized protein n=1 Tax=Thauera terpenica 58Eu RepID=S9ZRY9_9RHOO
Pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:KCZ99249.1}; TaxID=1280954 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas polymorpha PS728.;"
SCNpilot_cont_300_bf_scaffold_1398_curated_11
unknown

Not on your lists

6364..7011
DNA (648bp) protein (216aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1398_curated_12
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6821..8386)
DNA (1566bp) protein (522aa)
Uncharacterized protein n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9DF19_9RHIZ
FAD-dependent oxidoreductase {ECO:0000313|EMBL:KGF69732.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
FAD dependent oxidoreductase
SCNpilot_cont_300_bf_scaffold_1398_curated_13
Alcaligenes faecalis, Alcaligenes, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8502..8930)
DNA (429bp) protein (143aa)
Uncharacterized protein n=2 Tax=Alcaligenes RepID=M5IXP4_9BURK
Uncharacterized protein {ECO:0000313|EMBL:KGP01961.1}; TaxID=511 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Alcaligenes.;" source="Alcaligenes faecalis.;"
SCNpilot_cont_300_bf_scaffold_1398_curated_14
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9023..9835)
DNA (813bp) protein (271aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TDP4_MESCW
binding-protein-dependent transport system inner membrane protein; K02053 putative spermidine/putrescine transport system permease protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ADV09823.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
SCNpilot_cont_300_bf_scaffold_1398_curated_15
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9832..10743)
DNA (912bp) protein (304aa)
ABC-type spermidine/putrescine transport system, permease component I n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KF41_MESAW
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:CDX43038.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
ABC-type spermidine/putrescine transport system, permease component I
SCNpilot_cont_300_bf_scaffold_1398_curated_16
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10743..11822)
DNA (1080bp) protein (360aa)
Polyamine-transporting ATPase {ECO:0000256|SAAS:SAAS00083160}; EC=3.6.3.31 {ECO:0000256|SAAS:SAAS00083160};; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
Spermidine/putrescine ABC transporter ATPase n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YLF4_9RHIZ
spermidine/putrescine ABC transporter ATP-binding subunit
SCNpilot_cont_300_bf_scaffold_1398_curated_17
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11897..12928)
DNA (1032bp) protein (344aa)
Spermidine/putrescine ABC transporter,periplasmic substrate-binding protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F5H9_9RHIZ
Spermidine/putrescine ABC transporter,periplasmic substrate-binding protein {ECO:0000313|EMBL:CCV11408.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
spermidine/putrescine-binding periplasmic protein
SCNpilot_cont_300_bf_scaffold_1398_curated_18
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13145..14692)
DNA (1548bp) protein (516aa)
aldehyde dehydrogenase (EC:1.2.1.3); K00146 phenylacetaldehyde dehydrogenase [EC:1.2.1.39]
Probable aldehyde dehydrogenase n=1 Tax=Sagittula stellata E-37 RepID=A3K7U6_9RHOB
Aldehyde dehydrogenase {ECO:0000313|EMBL:KGF69422.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
SCNpilot_cont_300_bf_scaffold_1398_curated_19
bacterium YEK0313, Bacteria

Not on your lists

comp(14770..16641)
DNA (1872bp) protein (624aa)
tynA; tyramine oxidase; K00276 primary-amine oxidase [EC:1.4.3.21]
tyramine oxidase n=1 Tax=Rhizobium leguminosarum RepID=UPI0003755235
Amine oxidase {ECO:0000256|RuleBase:RU000672}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
SCNpilot_cont_300_bf_scaffold_1398_curated_20
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16922..17992)
DNA (1071bp) protein (357aa)
AraC family transcriptional regulator n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B3B1E2
DNA, contig: SP661 {ECO:0000313|EMBL:GAN15580.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1398_curated_21
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18161..19669)
DNA (1509bp) protein (503aa)
aldehyde dehydrogenase (EC:1.2.1.3)
NAD-dependent aldehyde dehydrogenase n=1 Tax=Phyllobacterium sp. YR531 RepID=J3HU05_9RHIZ
NAD-dependent aldehyde dehydrogenase {ECO:0000313|EMBL:EJN05836.1}; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
SCNpilot_cont_300_bf_scaffold_1398_curated_22
Dinoroseobacter shibae, Dinoroseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19748..21337)
DNA (1590bp) protein (530aa)
ggt1; gamma-glutamyltransferase; K00681 gamma-glutamyltranspeptidase [EC:2.3.2.2]
Gamma-glutamyltransferase {ECO:0000313|EMBL:ABV91820.1}; EC=2.3.2.2 {ECO:0000313|EMBL:ABV91820.1};; TaxID=398580 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Dinoroseobacter.;" source="Dinoroseobacter shibae (strain DSM 16493 / NCIMB 14021 / DFL 12).;"
Gamma-glutamyltransferase n=1 Tax=Dinoroseobacter shibae (strain DFL 12) RepID=A8LJZ4_DINSH
SCNpilot_cont_300_bf_scaffold_1398_curated_23
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21520..22209)
DNA (690bp) protein (230aa)
hypothetical protein n=1 Tax=Methylobacterium sp. 88A RepID=UPI00037DA48B
GntR protein {ECO:0000313|EMBL:BAQ48388.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
GntR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_1398_curated_24
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23284..23451
DNA (168bp) protein (56aa)
UPI0003CE0953 related cluster n=1 Tax=unknown RepID=UPI0003CE0953
Transposase {ECO:0000313|EMBL:EZQ12545.1}; Flags: Fragment;; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
integrase catalytic region
SCNpilot_cont_300_bf_scaffold_1398_curated_25
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24193..24909
DNA (717bp) protein (239aa)
UPI0003D05DC0 related cluster n=1 Tax=unknown RepID=UPI0003D05DC0
Transposase {ECO:0000313|EMBL:EXL01265.1}; Flags: Fragment;; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
putative transposase for insertion sequence IS408
SCNpilot_cont_300_bf_scaffold_1398_curated_26
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25323..26384)
DNA (1062bp) protein (354aa)
Uncharacterized protein n=1 Tax=Rhodovulum sp. PH10 RepID=J6LDH5_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EJW11228.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
diguanylate cyclase; K13590 diguanylate cyclase
SCNpilot_cont_300_bf_scaffold_1398_curated_27
Mesorhizobium sp. LNHC232B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27186..27473)
DNA (288bp) protein (96aa)
UPI0003CED579 related cluster n=1 Tax=unknown RepID=UPI0003CED579
Transcriptional regulator {ECO:0000313|EMBL:ESY62629.1}; TaxID=1287243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1398_curated_28
unknown

Not on your lists

27551..27844
DNA (294bp) protein (98aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1398_curated_29
unknown

Not on your lists

28274..29401
DNA (1128bp) protein (376aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1398_curated_30
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29501..30295)
DNA (795bp) protein (265aa)
ATP-binding protein n=3 Tax=Methylosinus sp. LW4 RepID=UPI000372478A
Transposase/IS protein {ECO:0000313|EMBL:CEG10508.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
istB-like ATP binding family protein 3
Displaying items 1-30 of 33 in total

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