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SCNpilot_cont_300_bf_scaffold_1667_curated

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1667_curated_1
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..473
DNA (471bp) protein (157aa)
NAD-glutamate dehydrogenase; K15371 glutamate dehydrogenase [EC:1.4.1.2]
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00036603D8
Methylobacterium aquaticum DNA, complete genome, strain: MA-22A {ECO:0000313|EMBL:BAQ47832.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
SCNpilot_cont_300_bf_scaffold_1667_curated_2
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(516..2108)
DNA (1593bp) protein (531aa)
IMP cyclohydrolase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F4C642
Bifunctional purine biosynthesis protein PurH {ECO:0000256|HAMAP-Rule:MF_00139, ECO:0000256|SAAS:SAAS00010516}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
SCNpilot_cont_300_bf_scaffold_1667_curated_3
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2256..3020
DNA (765bp) protein (255aa)
Cyclic nucleotide-binding protein n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VJM5_POLNA
Putative transcriptional regulatory protein, Crp/Fnr family {ECO:0000313|EMBL:KFC70886.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
cyclic nucleotide-binding protein
SCNpilot_cont_300_bf_scaffold_1667_curated_4
Rhodospirillum rubrum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3026..4657)
DNA (1632bp) protein (544aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=269796 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG; 4362 / NCIB 8255 / S1).;"
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00036C47BC
signal transduction histidine kinase
SCNpilot_cont_300_bf_scaffold_1667_curated_5
Nitratireductor basaltis, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4682..5245)
DNA (564bp) protein (188aa)
RNA polymerase sigma factor n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11DP6_MESSB
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=472175 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor basaltis.;"
RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_cont_300_bf_scaffold_1667_curated_6
unknown

Not on your lists

comp(5242..5451)
DNA (210bp) protein (70aa)
Uncharacterized protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YNN3_9RHIZ
SCNpilot_cont_300_bf_scaffold_1667_curated_7
Methyloceanibacter caenitepidi, Methyloceanibacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5644..6429
DNA (786bp) protein (262aa)
DNA-directed RNA polymerase n=1 Tax=Rhodovulum sp. PH10 RepID=J6UGU8_9RHOB
DNA-directed RNA polymerase specialized sigma subunit, sigma24-like {ECO:0000313|EMBL:BAQ17255.1}; TaxID=1384459 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceanibacter.;" source="Methyloceanibacter caenitepidi.;"
response regulator receiver
SCNpilot_cont_300_bf_scaffold_1667_curated_8
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6698..8425
DNA (1728bp) protein (576aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI000378586B
signal transduction histidine kinase
Signal transduction histidine kinase {ECO:0000313|EMBL:ADH87387.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCNpilot_cont_300_bf_scaffold_1667_curated_9
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8460..8636)
DNA (177bp) protein (59aa)
Membrane protein n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SIH4_9RHIZ
UPF0391 membrane protein W911_17310 {ECO:0000256|HAMAP-Rule:MF_01361}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
membrane protein
SCNpilot_cont_300_bf_scaffold_1667_curated_10
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9203..9838)
DNA (636bp) protein (212aa)
phosphatidylethanolamine-N-methyltransferase; K00551 phosphatidylethanolamine N-methyltransferase [EC:2.1.1.17]
Putative phosphatidylethanolamine-N-methyltransferase n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8HVR6_AZOC5
Putative phosphatidylethanolamine-N-methyltransferase {ECO:0000313|EMBL:BAF90347.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCNpilot_cont_300_bf_scaffold_1667_curated_11
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9845..11050)
DNA (1206bp) protein (402aa)
mnmA; tRNA-specific 2-thiouridylase MnmA; K00566 tRNA-specific 2-thiouridylase [EC:2.8.1.-]
tRNA-specific 2-thiouridylase MnmA {ECO:0000255|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000255|HAMAP-Rule:MF_00144};; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
tRNA-specific 2-thiouridylase MnmA n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=MNMA_METS4 rbh
SCNpilot_cont_300_bf_scaffold_1667_curated_12
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11210..12496
DNA (1287bp) protein (429aa)
Flagellar hook-length control protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HV68_PARL1
Flagellar hook-length control protein {ECO:0000313|EMBL:KFC66760.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
flagellar hook-length control protein
SCNpilot_cont_300_bf_scaffold_1667_curated_13
Methylobacterium sp. ME121, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12507..13169
DNA (663bp) protein (221aa)
flagellar hook capping protein n=1 Tax=Methylobacterium sp. 285MFTsu5.1 RepID=UPI000347E388
Flagellar hook capping protein FlgD {ECO:0000313|EMBL:GAN48278.1}; TaxID=1604132 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. ME121.;"
flagellar hook capping protein; K02389 flagellar basal-body rod modification protein FlgD
SCNpilot_cont_300_bf_scaffold_1667_curated_14
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13259..13603
DNA (345bp) protein (115aa)
hypothetical protein n=1 Tax=Xanthobacteraceae bacterium 501b RepID=UPI000367D323
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EJJ30235.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
SCNpilot_cont_300_bf_scaffold_1667_curated_15
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13991..14515
DNA (525bp) protein (175aa)
Uncharacterized protein n=4 Tax=Methylobacterium extorquens RepID=B7L2I8_METC4
hypothetical protein; K13592 regulator of CtrA degradation
Putative transcriptional regulator, AraC family {ECO:0000313|EMBL:ACS40140.1}; TaxID=272630 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1).;"
SCNpilot_cont_300_bf_scaffold_1667_curated_16
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(14692..14925)
DNA (234bp) protein (78aa)
50S ribosomal protein L31 n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000365D05E
50S ribosomal protein L31 {ECO:0000256|HAMAP-Rule:MF_00501, ECO:0000256|SAAS:SAAS00004482}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
rpmE; 50S ribosomal protein L31; K02909 large subunit ribosomal protein L31
SCNpilot_cont_300_bf_scaffold_1667_curated_17
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15071..16870
DNA (1800bp) protein (600aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00030D153E
ABC transporter, permease/ATP-binding protein {ECO:0000313|EMBL:EIM27365.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
lipid A ABC exporter family, fused ATPase and inner membrane subunits; K06147 ATP-binding cassette, subfamily B, bacterial
SCNpilot_cont_300_bf_scaffold_1667_curated_18
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16874..17293
DNA (420bp) protein (140aa)
Protein chain release factor B n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z010_9RHIZ
Protein chain release factor B {ECO:0000313|EMBL:EIM29552.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
class I peptide chain release factor; K15034 ribosome-associated protein
SCNpilot_cont_300_bf_scaffold_1667_curated_19
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17400..18143)
DNA (744bp) protein (248aa)
hypothetical protein n=1 Tax=Thalassospira lucentensis RepID=UPI0003B5C7C0
metal dependent phosphohydrolase
Metal dependent phosphohydrolase with a response regulator receiver domain protein {ECO:0000313|EMBL:AEQ52981.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
SCNpilot_cont_300_bf_scaffold_1667_curated_20
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19213..20112)
DNA (900bp) protein (300aa)
Polysaccharide deacetylase n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=G9ZW45_9PROT
Polysaccharide deacetylase {ECO:0000313|EMBL:KGM35571.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
polysaccharide deacetylase
SCNpilot_cont_300_bf_scaffold_1667_curated_21
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20176..21012)
DNA (837bp) protein (279aa)
5-keto-2-deoxygluconokinase / uncharacterized domain-containing protein; K03338 5-dehydro-2-deoxygluconokinase [EC:2.7.1.92]
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00035D8E8B
Kinase, PfkB family {ECO:0000313|EMBL:EHL99666.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
SCNpilot_cont_300_bf_scaffold_1667_curated_22
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21009..21812)
DNA (804bp) protein (268aa)
short chain dehydrogenase (EC:1.-.-.-)
Uncharacterized protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YXP0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EIM28732.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
SCNpilot_cont_300_bf_scaffold_1667_curated_23
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21927..22913
DNA (987bp) protein (329aa)
Inositol 2-dehydrogenase {ECO:0000313|EMBL:KFC70774.1}; EC=1.1.1.18 {ECO:0000313|EMBL:KFC70774.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
idhA; inositol 2-dehydrogenase (EC:1.1.1.18); K00010 myo-inositol 2-dehydrogenase [EC:1.1.1.18]
Putative dehydrogenase n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5YGZ3_9BRAD
SCNpilot_cont_300_bf_scaffold_1667_curated_24
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22913..23716
DNA (804bp) protein (268aa)
inositol monophosphatase; K01092 myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
UPI0003CF5368 related cluster n=1 Tax=unknown RepID=UPI0003CF5368
Inositol-phosphate phosphatase {ECO:0000313|EMBL:KFC70775.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
SCNpilot_cont_300_bf_scaffold_1667_curated_25
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23726..25147)
DNA (1422bp) protein (474aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI00035D786A
putative polysaccharide export protein
Putative polysaccharide export protein {ECO:0000313|EMBL:AEI06630.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_cont_300_bf_scaffold_1667_curated_26
bacterium YEK0313, Bacteria

Not on your lists

25246..26247
DNA (1002bp) protein (334aa)
Putative membrane protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YY26_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CEJ10064.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1667_curated_27
Methylobacterium sp. ME121, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26362..26772)
DNA (411bp) protein (137aa)
aspartate kinase (EC:2.7.2.4); K00928 aspartate kinase [EC:2.7.2.4]
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448};; TaxID=1604132 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. ME121.;"
aspartate kinase n=1 Tax=Methylobacterium sp. 285MFTsu5.1 RepID=UPI00037B7747
Displaying 27 items

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