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SCNpilot_cont_300_bf_scaffold_2415_curated

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_2415_curated_1
Acidomonas methanolica, Acidomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(155..1087)
DNA (933bp) protein (311aa)
lytic transglycosylase n=1 Tax=Hoeflea sp. 108 RepID=UPI0003600246
Lytic transglycosylase {ECO:0000313|EMBL:GAJ30331.1}; TaxID=1231351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidomonas.;" source="Acidomonas methanolica NBRC 104435.;"
transglycosylase
SCNpilot_cont_300_bf_scaffold_2415_curated_2
Aureimonas altamirensis, Aureimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1084..1419)
DNA (336bp) protein (112aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000377A635
Uncharacterized protein {ECO:0000313|EMBL:KHJ54577.1}; TaxID=370622 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aureimonas.;" source="Aureimonas altamirensis.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2415_curated_3
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1456..2001)
DNA (546bp) protein (182aa)
peptidase S26 n=1 Tax=Hoeflea sp. 108 RepID=UPI00036B2D82
Peptidase S26 {ECO:0000313|EMBL:KFL26588.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
conjugative transfer signal peptidase TraF
SCNpilot_cont_300_bf_scaffold_2415_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1998..2516)
DNA (519bp) protein (173aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00036CAE7D
Uncharacterized protein {ECO:0000313|EMBL:EYR84278.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2415_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2761..3819
DNA (1059bp) protein (353aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002F02267
Transposase for insertion sequence element IS1111A {ECO:0000313|EMBL:EYR84277.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
transposase rbh
SCNpilot_cont_300_bf_scaffold_2415_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4068..5231)
DNA (1164bp) protein (388aa)
replication protein A n=1 Tax=Hoeflea sp. 108 RepID=UPI00036A23A0
Putative replication protein {ECO:0000313|EMBL:EYR84276.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
replication initiator protein A
SCNpilot_cont_300_bf_scaffold_2415_curated_7
Aureimonas altamirensis, Aureimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5232..5501)
DNA (270bp) protein (90aa)
transcriptional regulator n=1 Tax=Hoeflea sp. 108 RepID=UPI0003781077
Transcriptional regulator {ECO:0000313|EMBL:KHJ54573.1}; TaxID=370622 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aureimonas.;" source="Aureimonas altamirensis.;"
phage transcriptional regulator AlpA
SCNpilot_cont_300_bf_scaffold_2415_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5963..6250
DNA (288bp) protein (96aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003827458
Uncharacterized protein {ECO:0000313|EMBL:EYR84274.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2415_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6378..6911)
DNA (534bp) protein (178aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003631F9F
Acetytransferase {ECO:0000313|EMBL:EYR84273.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
N-acetyltransferase GCN5
SCNpilot_cont_300_bf_scaffold_2415_curated_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7178..7699)
DNA (522bp) protein (174aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000365945D
Uncharacterized protein {ECO:0000313|EMBL:EYR84272.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2415_curated_11
Aureimonas altamirensis, Aureimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7746..7961)
DNA (216bp) protein (72aa)
Hypotheical conserved protein n=1 Tax=Brevundimonas abyssalis TAR-001 RepID=U2ZAR9_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:KHJ54570.1}; TaxID=370622 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aureimonas.;" source="Aureimonas altamirensis.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2415_curated_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8162..8692)
DNA (531bp) protein (177aa)
antirestriction protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00037EE36D
Antirestriction protein family protein {ECO:0000313|EMBL:EYR84271.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
antirestriction protein
SCNpilot_cont_300_bf_scaffold_2415_curated_13
Hyphomonas johnsonii, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9416..9763
DNA (348bp) protein (116aa)
Regulatory protein ArsR n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HXA6_PARL1
Transcriptional regulator {ECO:0000313|EMBL:KCZ92365.1}; TaxID=1280950 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas johnsonii MHS-2.;"
regulatory protein ArsR
SCNpilot_cont_300_bf_scaffold_2415_curated_14
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9756..10286
DNA (531bp) protein (177aa)
ATPase n=1 Tax=Maricaulis sp. JL2009 RepID=UPI0003A72C14
activator of Hsp90 ATPase 1 family protein
Activator of Hsp90 ATPase 1 family protein {ECO:0000313|EMBL:ABS64538.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_300_bf_scaffold_2415_curated_15
unknown

Not on your lists

11123..12100
DNA (978bp) protein (326aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_2415_curated_16
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12204..12761
DNA (558bp) protein (186aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002FCBFD3
Flavin reductase {ECO:0000313|EMBL:EHJ95394.1}; TaxID=1107544 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens 5A.;"
flavin reductase
SCNpilot_cont_300_bf_scaffold_2415_curated_17
Bordetella hinzii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12889..13452
DNA (564bp) protein (188aa)
Chromate transporter n=2 Tax=Burkholderia cenocepacia RepID=A0K5B6_BURCH
Chromate transport protein {ECO:0000313|EMBL:KCB44857.1}; TaxID=1331257 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella hinzii 5132.;"
chromate transporter
SCNpilot_cont_300_bf_scaffold_2415_curated_18
Burkholderia vietnamiensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13456..13992
DNA (537bp) protein (179aa)
Chromate transport protein ChrA n=1 Tax=Burkholderia sp. KJ006 RepID=I2DKL3_9BURK
chromate transport protein ChrA
Chromate transporter {ECO:0000313|EMBL:ABO53868.1}; Flags: Precursor;; TaxID=269482 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia vietnamiensis (strain G4 / LMG 22486) (Burkholderia; cepacia (strain R1808)).;"
SCNpilot_cont_300_bf_scaffold_2415_curated_19
Gimesia maris, Gimesia, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

14100..14681
DNA (582bp) protein (194aa)
intracellular proteinase I (EC:3.2.-.-); K05520 protease I [EC:3.2.-.-]
Probable intracellular proteinase I n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C3C3_9PLAN
Probable intracellular proteinase I {ECO:0000313|EMBL:EDL60718.1}; TaxID=344747 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Gimesia.;" source="Gimesia maris DSM 8797.;"
SCNpilot_cont_300_bf_scaffold_2415_curated_20
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14690..15496)
DNA (807bp) protein (269aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000377E3EB
Uncharacterized protein {ECO:0000313|EMBL:KGM35823.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2415_curated_21
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15630..16334
DNA (705bp) protein (235aa)
Uncharacterized protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YZ12_9RHIZ
Calcium-binding protein {ECO:0000313|EMBL:KFG69626.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
import inner membrane translocase subunit Tim44
SCNpilot_cont_300_bf_scaffold_2415_curated_22
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16342..17016
DNA (675bp) protein (225aa)
MltA domain-containing protein; K08304 membrane-bound lytic murein transglycosylase A [EC:3.2.1.-]
Membrane-bound lytic murein transglycosylase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YZ13_9RHIZ
Membrane-bound lytic murein transglycosylase {ECO:0000313|EMBL:EIM29205.1}; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
SCNpilot_cont_300_bf_scaffold_2415_curated_23
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17013..17456
DNA (444bp) protein (148aa)
MltA domain-containing protein; K08304 membrane-bound lytic murein transglycosylase A [EC:3.2.1.-]
Membrane-bound lytic murein transglycosylase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YZ13_9RHIZ
Membrane-bound lytic murein transglycosylase {ECO:0000313|EMBL:EIM29205.1}; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
SCNpilot_cont_300_bf_scaffold_2415_curated_24
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17456..18013
DNA (558bp) protein (186aa)
Smr protein/MutS2 n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IHX1_METNO
Smr protein/MutS2
Smr protein/MutS2 {ECO:0000313|EMBL:ACL56009.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
SCNpilot_cont_300_bf_scaffold_2415_curated_25
Hoeflea sp. BRH_c9, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18010..18426
DNA (417bp) protein (139aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D90990
XRE family transcriptional regulator {ECO:0000313|EMBL:KJS07772.1}; TaxID=1629712 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BRH_c9.;"
XRE family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_2415_curated_26
Mesorhizobium sp. L2C067A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18460..19413)
DNA (954bp) protein (318aa)
UPI0003D01563 related cluster n=1 Tax=unknown RepID=UPI0003D01563
Uncharacterized protein {ECO:0000313|EMBL:ESZ23929.1}; TaxID=1287106 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C067A000.;"
SCNpilot_cont_300_bf_scaffold_2415_curated_27
Bartonella tamiae, Bartonella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19664..19984
DNA (321bp) protein (107aa)
DNA protection during starvation protein n=2 Tax=Bartonella tamiae RepID=J1K2A7_9RHIZ
DNA protection during starvation protein {ECO:0000313|EMBL:EJF91245.1}; TaxID=1094558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bartonellaceae; Bartonella.;" source="Bartonella tamiae Th239.;"
ferritin; K04047 starvation-inducible DNA-binding protein
SCNpilot_cont_300_bf_scaffold_2415_curated_28
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20086..21762)
DNA (1677bp) protein (559aa)
formate--tetrahydrofolate ligase (EC:6.3.4.3); K01938 formate--tetrahydrofolate ligase [EC:6.3.4.3]
Formate--tetrahydrofolate ligase {ECO:0000256|HAMAP-Rule:MF_01543}; EC=6.3.4.3 {ECO:0000256|HAMAP-Rule:MF_01543};; Formyltetrahydrofolate synthetase {ECO:0000256|HAMAP-Rule:MF_01543}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
formate--tetrahydrofolate ligase n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000362B0E1
SCNpilot_cont_300_bf_scaffold_2415_curated_29
unknown

Not on your lists

comp(21793..22725)
DNA (933bp) protein (311aa)
Methionyl-tRNA formyltransferase {ECO:0000256|SAAS:SAAS00043681, ECO:0000313|EMBL:CPR16293.1}; EC=2.1.2.9 {ECO:0000256|SAAS:SAAS00150580};; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
Methionyl-tRNA formyltransferase n=1 Tax=alpha proteobacterium BAL199 RepID=A8TPV7_9PROT
Formyl transferase,formyl transferase family protein
SCNpilot_cont_300_bf_scaffold_2415_curated_30
Bradyrhizobium sp. S23321, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22873..24150)
DNA (1278bp) protein (426aa)
Formyl-CoA:oxalate CoA-transferase {ECO:0000256|HAMAP-Rule:MF_00742}; Short=FCOCT {ECO:0000256|HAMAP-Rule:MF_00742};; EC=2.8.3.16 {ECO:0000256|HAMAP-Rule:MF_00742};; Formyl-coenzyme A transferase {ECO:0000256|HAMAP-Rule:MF_00742}; TaxID=335659 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. S23321.;"
Formyl-coenzyme A transferase n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0GB99_9BRAD
formyl-coenzyme A transferase
Displaying items 1-30 of 35 in total

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