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SCNpilot_cont_300_bf_scaffold_1013_curated

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1013_curated_1
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..474)
DNA (474bp) protein (158aa)
Integrase catalytic region n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2IZX5_POLGS
integrase catalytic subunit; K07497 putative transposase
Integrase catalytic region {ECO:0000313|EMBL:ADZ71013.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCNpilot_cont_300_bf_scaffold_1013_curated_2
Mesorhizobium sp. L103C131B0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(507..1868)
DNA (1362bp) protein (454aa)
UPI0003CF9FD2 related cluster n=1 Tax=unknown RepID=UPI0003CF9FD2
Transposase IS110 {ECO:0000313|EMBL:ESZ53647.1}; TaxID=1287089 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C131B0.;"
ISPpu9, transposase
SCNpilot_cont_300_bf_scaffold_1013_curated_3
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2416..3348
DNA (933bp) protein (311aa)
transposase IS401 n=1 Tax=Xanthobacteraceae RepID=UPI000360CE3F
Transposase {ECO:0000313|EMBL:GAN78020.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
integrase, catalytic region
SCNpilot_cont_300_bf_scaffold_1013_curated_4
Citreicella sp. 357, Citreicella, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3364..4872)
DNA (1509bp) protein (503aa)
Acyl-CoA synthetase n=1 Tax=Citreicella sp. 357 RepID=I1B1T8_9RHOB
Acyl-CoA synthetase {ECO:0000313|EMBL:EIE52709.1}; TaxID=766499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Citreicella.;" source="Citreicella sp. 357.;"
putative AMP-dependent synthetase and ligase
SCNpilot_cont_300_bf_scaffold_1013_curated_5
Citreicella sp. 357, Citreicella, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4880..5857)
DNA (978bp) protein (326aa)
Acyl-CoA dehydrogenase n=1 Tax=Citreicella sp. 357 RepID=I1B1T9_9RHOB
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:EIE52710.1}; TaxID=766499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Citreicella.;" source="Citreicella sp. 357.;"
putative acyl-CoA dehydrogenase
SCNpilot_cont_300_bf_scaffold_1013_curated_6
Citreicella sp. 357, Citreicella, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6000..7277)
DNA (1278bp) protein (426aa)
2-oxo acid dehydrogenase acyltransferase n=1 Tax=Citreicella sp. 357 RepID=I1B1U0_9RHOB
2-oxo acid dehydrogenase acyltransferase {ECO:0000313|EMBL:EIE52711.1}; TaxID=766499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Citreicella.;" source="Citreicella sp. 357.;"
2-oxo acid dehydrogenases acyltransferase
SCNpilot_cont_300_bf_scaffold_1013_curated_7
Citreicella sp. 357, Citreicella, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7280..8062)
DNA (783bp) protein (261aa)
Enoyl-CoA hydratase/isomerase n=1 Tax=Citreicella sp. 357 RepID=I1B1U1_9RHOB
Enoyl-CoA hydratase/isomerase {ECO:0000313|EMBL:EIE52712.1}; TaxID=766499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Citreicella.;" source="Citreicella sp. 357.;"
enoyl-CoA hydratase
SCNpilot_cont_300_bf_scaffold_1013_curated_8
Citreicella sp. 357, Citreicella, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8068..9042)
DNA (975bp) protein (325aa)
pyruvate dehydrogenase E1 beta subunit; K00162 pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] rbh
Putative pyruvate dehydrogenase E1 beta subunit n=1 Tax=Citreicella sp. 357 RepID=I1B1U2_9RHOB
Putative pyruvate dehydrogenase E1 beta subunit {ECO:0000313|EMBL:EIE52713.1}; TaxID=766499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Citreicella.;" source="Citreicella sp. 357.;"
SCNpilot_cont_300_bf_scaffold_1013_curated_9
Citreicella sp. 357, Citreicella, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9042..10004)
DNA (963bp) protein (321aa)
pyruvate dehydrogenase (acetyl-transferring) (EC:1.2.4.1); K00161 pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
Putative 2-oxo acid dehydrogenase alpha subunit n=1 Tax=Citreicella sp. 357 RepID=I1B1U3_9RHOB
Putative 2-oxo acid dehydrogenase alpha subunit {ECO:0000313|EMBL:EIE52714.1}; TaxID=766499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Citreicella.;" source="Citreicella sp. 357.;"
SCNpilot_cont_300_bf_scaffold_1013_curated_10
Pandoraea pnomenusa, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10066..10797)
DNA (732bp) protein (244aa)
3-oxoacyl-[acyl-carrier protein] reductase (EC:1.1.1.100)
3-oxoacyl-[acyl-carrier protein] reductase n=1 Tax=Achromobacter xylosoxidans NH44784-1996 RepID=R4XPC7_ALCXX
Uncharacterized protein {ECO:0000313|EMBL:KHQ95712.1}; TaxID=93220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pnomenusa.;"
SCNpilot_cont_300_bf_scaffold_1013_curated_11
Gammaproteobacteria bacterium MOLA455, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10794..11765)
DNA (972bp) protein (324aa)
Carboxylesterase NlhH {ECO:0000313|EMBL:ETN91447.1}; EC=3.1.1.1 {ECO:0000313|EMBL:ETN91447.1};; TaxID=1411685 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Gammaproteobacteria bacterium MOLA455.;"
Esterase/lipase/thioesterase n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YS68_9GAMM
lipase/esterase
SCNpilot_cont_300_bf_scaffold_1013_curated_12
RLO_Entotheonella_69_37, Entotheonella, Bacteria

Not on your lists

12126..13406
DNA (1281bp) protein (427aa)
Luciferase-like, subgroup n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CN60_PSEUX
luciferase-like protein
Tax=RIFCSPLOWO2_12_FULL_Entotheonella_69_37_curated
SCNpilot_cont_300_bf_scaffold_1013_curated_13
Heliobacterium modesticaldum, Heliobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13471..14646
DNA (1176bp) protein (392aa)
Branched-chain amino acid abc transporter, amino acid-binding protein n=1 Tax=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) RepID=B0TAN0_HELMI
branched-chain amino acid abc transporter amino acid-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein
Branched-chain amino acid abc transporter, amino acid-binding protein {ECO:0000313|EMBL:ABZ83682.1}; TaxID=498761 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Heliobacteriaceae; Heliobacterium.;" source="Heliobacterium modesticaldum (strain ATCC 51547 / Ice1).;"
SCNpilot_cont_300_bf_scaffold_1013_curated_14
Burkholderia sp. MSh2, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14728..15552
DNA (825bp) protein (275aa)
hypothetical protein n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=UPI0001C2AEAA
Uncharacterized protein {ECO:0000313|EMBL:KEZ03620.1}; TaxID=1506588 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. MSh2.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1013_curated_15
Heliobacterium modesticaldum, Heliobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15584..16465
DNA (882bp) protein (294aa)
Branched chain amino acid abc transporter, permease protein n=1 Tax=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) RepID=B0TAM8_HELMI
branched chain amino acid abc transporter permease protein
Branched chain amino acid abc transporter, permease protein {ECO:0000313|EMBL:ABZ83680.1}; TaxID=498761 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Heliobacteriaceae; Heliobacterium.;" source="Heliobacterium modesticaldum (strain ATCC 51547 / Ice1).;"
SCNpilot_cont_300_bf_scaffold_1013_curated_16
Heliobacterium modesticaldum, Heliobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16462..17352
DNA (891bp) protein (297aa)
Branched-chain amino acid abc transporter, permease protein n=1 Tax=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) RepID=B0TAM7_HELMI
branched-chain amino acid abc transporter permease protein; K01998 branched-chain amino acid transport system permease protein
Branched-chain amino acid abc transporter, permease protein {ECO:0000313|EMBL:ABZ83679.1}; TaxID=498761 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Heliobacteriaceae; Heliobacterium.;" source="Heliobacterium modesticaldum (strain ATCC 51547 / Ice1).;"
SCNpilot_cont_300_bf_scaffold_1013_curated_17
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17349..18110
DNA (762bp) protein (254aa)
sulfate-transporting ATPase (EC:3.6.3.25); K01995 branched-chain amino acid transport system ATP-binding protein
Sulfate-transporting ATPase n=1 Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CQ00_DESK7
Tax=RBG_16_Deltaproteobacteria_64_85_curated
SCNpilot_cont_300_bf_scaffold_1013_curated_18
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18100..18834
DNA (735bp) protein (245aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RNE8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL75659.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
ABC transporter-like protein; K01996 branched-chain amino acid transport system ATP-binding protein
SCNpilot_cont_300_bf_scaffold_1013_curated_19
Burkholderia sp. lig30, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18846..19871
DNA (1026bp) protein (342aa)
AraC family transcriptional regulator n=1 Tax=Burkholderia sp. JPY347 RepID=UPI00036FC247
DJ-1 domain, InhA-type {ECO:0000313|EMBL:KDB06083.1}; TaxID=1192124 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. lig30.;"
AraC family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_1013_curated_20
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19892..20893
DNA (1002bp) protein (334aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI00036A3FB3
Uncharacterized protein {ECO:0000313|EMBL:EKF41652.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1013_curated_21
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20933..22288
DNA (1356bp) protein (452aa)
Uncharacterized protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2IBL4_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EKE67281.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1013_curated_22
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22385..22603
DNA (219bp) protein (73aa)
Transposase IS3/IS911 n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SUW6_NITWN
transposase IS3/IS911
Transposase IS3/IS911 {ECO:0000313|EMBL:ABA03925.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCNpilot_cont_300_bf_scaffold_1013_curated_23
Oceaniovalibus guishaninsula, Oceaniovalibus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22555..22884)
DNA (330bp) protein (110aa)
IS5 family transposase orfB n=1 Tax=Oceaniovalibus guishaninsula JLT2003 RepID=K2HT21_9RHOB
IS5 family transposase orfB {ECO:0000313|EMBL:EKE45774.1}; TaxID=1231392 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceaniovalibus.;" source="Oceaniovalibus guishaninsula JLT2003.;"
IS5 family transposase orfB; K07497 putative transposase
SCNpilot_cont_300_bf_scaffold_1013_curated_24
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22841..23152)
DNA (312bp) protein (104aa)
Integrase core domain protein n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RQ59_9PROT
Integrase core domain protein {ECO:0000313|EMBL:EFH10517.1}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
IS5 family transposase orfB
SCNpilot_cont_300_bf_scaffold_1013_curated_25
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23189..23395)
DNA (207bp) protein (69aa)
Putative uncharacterized protein (Fragment) n=1 Tax=Methylobacterium extorquens DSM 13060 RepID=H1KVY3_METEX
Tra5 protein {ECO:0000313|EMBL:BAQ49165.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
putative transposase orfB for insertion sequence element
SCNpilot_cont_300_bf_scaffold_1013_curated_26
Nitrococcus mobilis, Nitrococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23392..23706)
DNA (315bp) protein (105aa)
Transposase IS3/IS911 family protein id=3925302 bin=GWC2_Syntrophobacterales_56_13 species=Burkholderia phymatum genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
transposase IS3/IS911 family protein
Uncharacterized protein {ECO:0000313|EMBL:EAR23282.1}; TaxID=314278 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Nitrococcus.;" source="Nitrococcus mobilis Nb-231.;"
SCNpilot_cont_300_bf_scaffold_1013_curated_27
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24531..25301
DNA (771bp) protein (257aa)
Glycine-rich protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LUC5_RHITR
glycine-rich protein
Glycine-rich protein {ECO:0000313|EMBL:AGB74837.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_300_bf_scaffold_1013_curated_28
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26007..26264
DNA (258bp) protein (86aa)
Phage integrase family protein n=1 Tax=Methylocystis sp. (strain SC2) RepID=J7Q8U9_METSZ
Phage integrase family protein
Phage integrase family protein {ECO:0000313|EMBL:CCJ07342.1}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
SCNpilot_cont_300_bf_scaffold_1013_curated_29
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26141..26587)
DNA (447bp) protein (149aa)
single-stranded-DNA-specific exonuclease RecJ; K07462 single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F6A287
Single-stranded-DNA-specific exonuclease RecJ {ECO:0000313|EMBL:EIM28859.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
Displaying 29 items

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