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SCNpilot_cont_300_bf_scaffold_347_curated_82

Organism: scnpilot_dereplicated_Rhizobiales_4

near complete RP 52 / 55 BSCG 51 / 51 MC: 3 ASCG 11 / 38 MC: 1
Location: comp(108403..109077)

Top 3 Functional Annotations

Value Algorithm Source
Transcriptional regulator, TetR family n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CUT6_VARPS similarity UNIREF
DB: UNIREF100
  • Identity: 43.9
  • Coverage: 187.0
  • Bit_score: 173
  • Evalue 3.20e-40
TetR family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 43.9
  • Coverage: 187.0
  • Bit_score: 173
  • Evalue 1.00e-40
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ACS18514.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 43.9
  • Coverage: 187.0
  • Bit_score: 173
  • Evalue 4.50e-40

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 675
ATGCAGGAGTTCGCGGCGAAAGGGCCAGACGCCCGCATTGAAGATATTGCTGAAATGGCGGGCGCCAATCGGCGGATGGCATATTTCTATTTCGGTAGCAAAGAAGGACTTTATCTAGCGGCATTGGAAGCGACCTATCTTGAGCTCGCAGAAGTCGAACAAGCCATAGATGTTGACGCACTCGGGCCGGTCGAGGCGATCGCTGCGCTGGTCTGCGTGAAGTTCGATCATTTCATCAGATATCCGCGCTACGTGAGCTTCCTGAACATTGAGAACCTTTATCAGGCCCGTCACCTCGCCTCTTCAGAGCGCATCGGGGAACTCCGTGGTCCGCTGCTCACAATCATAAGCCGCGTATTGCAGCGTGGTAAGACAGCCGGCGTGTTTCGCTCGGATGTCGATCCATTGGAGCTCTACTTGGCGATCAATGCCTTGGGATACTACGTCTTCTCCAACCAATATACGCTCTCCACGGTCTTCAATGTCGATCTCATGTCACCGGAATCCTTGGCAAGGAGGCGAAGCATGATCGCCGACATGGTGACGTCATATCTCACCAATGTGGATGGATCCGCGAAAGCGGCAACTGCTCGCCAACGGCTATCGCATGAGGAAAAGAAAGACGCGTCTTCGGTAGCGAAACCTAAGACTCCGGCCTCGAGGAAAAGCCGATGA
PROTEIN sequence
Length: 225
MQEFAAKGPDARIEDIAEMAGANRRMAYFYFGSKEGLYLAALEATYLELAEVEQAIDVDALGPVEAIAALVCVKFDHFIRYPRYVSFLNIENLYQARHLASSERIGELRGPLLTIISRVLQRGKTAGVFRSDVDPLELYLAINALGYYVFSNQYTLSTVFNVDLMSPESLARRRSMIADMVTSYLTNVDGSAKAATARQRLSHEEKKDASSVAKPKTPASRKSR*